{"id":"W6958745815","doi":"10.6084/m9.figshare.28293609.v1","title":"Additional file 2 of A new method for detecting mixed Mycobacterium tuberculosis infection and reconstructing constituent strains provides insights into transmission","year":2025,"lang":"en","type":"dataset","venue":"London School of Hygiene & Tropical Medicine","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Mycobacterium tuberculosis; Transmission (telecommunications); Genome; Genomic information; Tuberculosis; Mycobacterium tuberculosis complex; Disease transmission","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch","metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003102976,0.0007406158,0.001977149,0.001243757,0.0002138829,0.00003152893,0.0003159087,0.0006667092,0.08174124],"category_scores_gemma":[0.02247223,0.00061008,0.0003340596,0.0008707934,0.0006200534,0.0003032385,0.0001526688,0.001022418,0.000009361135],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003144256,"about_ca_system_score_gemma":0.001273553,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001753031,"about_ca_topic_score_gemma":0.0009425138,"domain_scores_codex":[0.9951664,0.0004665532,0.002028741,0.001047715,0.0008069696,0.000483595],"domain_scores_gemma":[0.9904444,0.006143234,0.00150461,0.0006195763,0.0006936424,0.0005945034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000547349,0.0001209933,0.00004716427,0.003098435,0.0003553198,0.000007318209,0.00005368445,0.000006853689,0.007289337,0.00001054812,0.9392743,0.04918874],"study_design_scores_gemma":[0.003679862,0.001613906,0.001907199,0.01364302,0.001095692,0.00008803418,0.0001391816,0.0002571416,0.003545622,0.0005715031,0.9729633,0.0004955146],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.001488159,0.0005408188,0.004690281,0.0001772996,0.0004596668,0.001476031,0.991048,0.00007979428,0.00003994497],"genre_scores_gemma":[0.0001519303,0.0001864508,0.08175166,0.00007418886,0.0007194945,0.0004947707,0.9165263,0.00004526163,0.00004990217],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.08173189,"threshold_uncertainty_score":0.999635,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01620032021642617,"score_gpt":0.2983001328291341,"score_spread":0.2820998126127079,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}