{"id":"W6958925204","doi":"10.6084/m9.figshare.c.6586123.v1","title":"Who’s afraid of the X? Incorporating the X and Y chromosomes into the analysis of DNA methylation array data","year":2024,"lang":"en","type":"other","venue":"Figshare","topic":"Botanical Research and Chemistry","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Y chromosome; Human genome; Epigenome; DNA methylation; Chromosome; Genome; X chromosome; Identification (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001504506,0.00009584652,0.0001816496,0.000007170206,0.00006243796,0.00004878425,0.000933392,0.0001142941,0.04014257],"category_scores_gemma":[0.0008873686,0.00002026576,0.0001007259,0.0006701052,0.00006322308,0.00002382956,0.000538513,0.0001961619,0.00001511293],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005591307,"about_ca_system_score_gemma":0.0000150319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001918835,"about_ca_topic_score_gemma":0.002662535,"domain_scores_codex":[0.9991881,0.00007297084,0.000145963,0.0002165832,0.0002858763,0.00009052302],"domain_scores_gemma":[0.9990879,0.000374929,0.0002092195,0.000264941,0.000035017,0.00002803932],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000003115879,0.00001401567,0.00008277413,0.0002298616,0.0005192013,5.556423e-7,0.00009538588,6.042464e-7,0.03968104,0.00001660113,0.9334627,0.02589419],"study_design_scores_gemma":[0.00004323313,0.00004094079,0.009096853,0.002354871,0.000451405,6.923633e-7,0.0005831963,0.0003544972,0.01262804,0.0007048625,0.9735221,0.0002192777],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.009948189,0.02878076,3.456639e-7,0.008142766,0.00008630196,0.001017678,0.8024594,0.00008942076,0.1494751],"genre_scores_gemma":[0.8127034,0.000239097,0.00002244746,0.0001862226,0.0008425608,0.00008029377,0.08182709,0.00002016054,0.1040788],"genre_candidate":"dataset","genre_consensus":null,"teacher_disagreement_score":0.8027552,"threshold_uncertainty_score":0.9607349,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06308749053820463,"score_gpt":0.2906690349162817,"score_spread":0.227581544378077,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}