{"id":"W6958925204","doi":"10.6084/m9.figshare.c.6586123.v1","title":"Who’s afraid of the X? Incorporating the X and Y chromosomes into the analysis of DNA methylation array data","year":2024,"lang":"en","type":"other","venue":"Figshare","topic":"Botanical Research and Chemistry","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Y chromosome; Human genome; Epigenome; DNA methylation; Chromosome; Genome; X chromosome; Identification (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01751989,0.0005477815,0.0009250927,0.001161805,0.0008819729,0.002761508,0.001094473,0.001039375,0.003175848],"category_scores_gemma":[0.03632722,0.0003607219,0.001072391,0.001449551,0.001442272,0.001135819,0.00127177,0.001626497,0.001043523],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005075787,"about_ca_system_score_gemma":0.001464564,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004599567,"about_ca_topic_score_gemma":0.007811471,"domain_scores_codex":[0.9880517,0.005935734,0.001080937,0.002373523,0.002159728,0.000398444],"domain_scores_gemma":[0.97948,0.0117744,0.002658315,0.002482933,0.003192437,0.0004118376],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002278125,0.000103371,0.5306072,0.001545172,0.002165608,0.00083254,0.003102632,0.002490741,0.09346624,0.006389488,0.01176401,0.3452548],"study_design_scores_gemma":[0.0002699232,0.001666846,0.5698376,0.001817106,0.002332131,0.005585521,0.003414833,0.03283616,0.2293093,0.03857613,0.1138825,0.000471856],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.500445,0.01653148,0.4495465,0.01557824,0.001356217,0.0006816493,0.005729739,0.001948128,0.008183146],"genre_scores_gemma":[0.7271775,0.003681197,0.2560259,0.005229602,0.0005019759,0.0005910188,0.002132737,0.0007762241,0.003883894],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.01751989,"threshold_uncertainty_score":0.09265512,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06308749053820463,"score_gpt":0.2906690349162817,"score_spread":0.227581544378077,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}