{"id":"W6959336637","doi":"10.6084/m9.figshare.c.7603182","title":"A single-plasmid-based, easily curable CRISPR/Cas9 system for rapid, iterative genome editing in Pseudomonas putida KT2440","year":2024,"lang":"en","type":"other","venue":"Figshare","topic":"Date Palm Research Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"","keywords":"Pseudomonas putida; Genome editing; Recombineering; Plasmid; Genome; Transposable element; Electroporation; Bacterial genome size","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001703773,0.0004488915,0.0005570079,0.0001075043,0.00014229,0.000335948,0.0005209403,0.0003131152,0.06517173],"category_scores_gemma":[0.000666968,0.0001907944,0.0002317577,0.000520418,0.00002540904,0.0000881067,0.0002591301,0.0003531332,0.003939467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001937473,"about_ca_system_score_gemma":0.00003593351,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001725964,"about_ca_topic_score_gemma":0.001090519,"domain_scores_codex":[0.9975756,0.0001189522,0.0003361814,0.0008160601,0.0004219878,0.0007311899],"domain_scores_gemma":[0.9988813,0.0005099476,0.0002080363,0.0001197321,0.0001439408,0.0001369981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001589856,0.00004702191,0.000009432385,0.001983232,0.00005988276,0.00009260408,0.00004529681,0.000002930391,0.001181856,0.000009082214,0.9935926,0.002960215],"study_design_scores_gemma":[0.0001974416,0.0002229934,0.0000640978,0.009717304,0.00001496124,0.000005305331,0.0003856106,0.0001351184,0.0005012249,0.00001727565,0.9883342,0.0004044946],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00005427411,0.01000751,5.813502e-7,0.000581059,0.0003300596,0.002143295,0.7764353,0.0004870439,0.2099609],"genre_scores_gemma":[0.03693841,0.00007338903,0.0004265869,0.0005216368,0.009235383,0.009156931,0.5274717,0.0002133606,0.4159626],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.2489636,"threshold_uncertainty_score":0.9968361,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06971863331668021,"score_gpt":0.2794728979829303,"score_spread":0.2097542646662501,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}