{"id":"W6960060837","doi":"10.11575/prism/35159","title":"A pipeline of programs for collecting and analyzing group II intron retroelement sequences from GenBank","year":2013,"lang":"en","type":"other","venue":"University of Calgary","topic":"Agricultural Practices and Plant Genetics","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Intron; GenBank; Group II intron; Group I catalytic intron; Identification (biology); Genome; Phylogenetic tree; Pipeline (software); Sequence (biology)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003841016,0.004292573,0.00148391,0.005033228,0.00184872,0.002441413,0.003081223,0.001044726,0.030526],"category_scores_gemma":[0.00713334,0.001941051,0.001869182,0.00319546,0.000588265,0.00231165,0.002021539,0.001974601,0.02547931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001205854,"about_ca_system_score_gemma":0.003389405,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006758407,"about_ca_topic_score_gemma":0.007142296,"domain_scores_codex":[0.9982235,0.0002368074,0.0002720308,0.0006198636,0.0004507516,0.0001970555],"domain_scores_gemma":[0.9973001,0.0009642395,0.0003141511,0.0003739402,0.0007741367,0.0002734936],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002367456,0.0009471519,0.01514941,0.003422602,0.0005268552,0.001050248,0.001296526,0.00437888,0.08827399,0.004907636,0.3962898,0.4813894],"study_design_scores_gemma":[0.001422713,0.000846705,0.04005342,0.0008120806,0.0006384448,0.002516255,0.0009419112,0.1506634,0.1837736,0.01822848,0.5993338,0.0007691704],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01238148,0.0005254374,0.4046138,0.0005245957,0.0001695331,0.002408151,0.07989968,0.4899202,0.009557148],"genre_scores_gemma":[0.02092999,0.0005397141,0.7812462,0.0004894803,0.00006801904,0.002743156,0.1667088,0.0198105,0.007464156],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.030526,"threshold_uncertainty_score":0.1021197,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01848150752234777,"score_gpt":0.1932481153064591,"score_spread":0.1747666077841113,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}