{"id":"W6960231635","doi":"10.1371/journal.pone.0214870.g003","title":"Minimum spanning tree analysis of 24-locus MIRU-VNTR of the 1,894 intra- and interprovincially clustered isolates with lineage indicated, Ontario and British Columbia (2008–2014).","year":2019,"lang":"en","type":"other","venue":"Figshare","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Lineage (genetic); Tree (set theory); Phylogenetic tree; Minimum spanning tree; Phylogenetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003215806,0.0002582338,0.0004405114,0.001816328,0.00188291,0.0006714941,0.0006583576,0.0003207628,0.01261708],"category_scores_gemma":[0.0008790097,0.0002004499,0.0003865534,0.003203922,0.0002352816,0.0001891827,0.0002800299,0.0003934473,0.002130859],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001589799,"about_ca_system_score_gemma":0.001922946,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2435765,"about_ca_topic_score_gemma":0.5258302,"domain_scores_codex":[0.9997917,0.00002149413,0.00001288037,0.00009917613,0.00003260532,0.00004216943],"domain_scores_gemma":[0.9995716,0.0001082422,0.00007717963,0.00003703515,0.0001172305,0.00008864381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004797665,0.0003820948,0.2930152,0.002716074,0.001757407,0.00546745,0.007348359,0.02498474,0.284671,0.009385076,0.1562204,0.2092545],"study_design_scores_gemma":[0.00009464469,0.00009195227,0.9299327,0.0002550834,0.0003894743,0.0007471422,0.002718542,0.01346329,0.003318711,0.001698902,0.04723079,0.00005879751],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8055265,0.0005219036,0.00782791,0.0002901343,0.00004158826,0.0001599877,0.1684146,0.0006453815,0.016572],"genre_scores_gemma":[0.7979322,0.0003667167,0.01612696,0.00007450586,0.000008722308,0.00009415647,0.1765332,0.0002974345,0.008566132],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7564235,"threshold_uncertainty_score":0.4843175,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009720835901177196,"score_gpt":0.178432842469548,"score_spread":0.1687120065683708,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}