{"id":"W6960659539","doi":"10.1371/journal.pgen.1004830.g001","title":"Phylogenomic relationships among samples.","year":2015,"lang":"en","type":"other","venue":"Figshare","topic":"Fetal and Pediatric Neurological Disorders","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Population; Parapatric speciation; Ecotype; Genome; Cluster analysis; Phylogenetic tree; Hierarchical clustering","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001067467,0.0005329172,0.000591052,0.004542928,0.001493082,0.001117272,0.0007025676,0.0006994442,0.0557191],"category_scores_gemma":[0.003877098,0.0003271386,0.0009154044,0.006229358,0.0003673097,0.0007180523,0.001171295,0.001128838,0.009199077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007121012,"about_ca_system_score_gemma":0.000732804,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006814008,"about_ca_topic_score_gemma":0.008414796,"domain_scores_codex":[0.9992921,0.000132247,0.00003917496,0.0003330722,0.00009140471,0.0001119997],"domain_scores_gemma":[0.9990028,0.0003641694,0.0001590238,0.0001818067,0.0001696564,0.0001226364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.002494571,0.0002800303,0.2383254,0.002622089,0.001559589,0.002821263,0.005823971,0.007850538,0.08342875,0.02507821,0.3495538,0.2801618],"study_design_scores_gemma":[0.000245958,0.0002277312,0.4626389,0.0004621193,0.0006714315,0.002775393,0.00286144,0.02429799,0.006384411,0.009789462,0.4895136,0.0001317184],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.2820385,0.001858876,0.03962994,0.001432267,0.0004693393,0.0006505067,0.6216839,0.005910851,0.04632589],"genre_scores_gemma":[0.4197671,0.0007693589,0.07408584,0.0003810379,0.00005114457,0.0006369259,0.4902945,0.001811483,0.01220252],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.0557191,"threshold_uncertainty_score":0.1863989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1350857625368724,"score_gpt":0.2684358727590921,"score_spread":0.1333501102222197,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}