{"id":"W6960813995","doi":"10.1371/journal.pone.0292840.g003","title":"Phylogenetic tree of the coronavirus (CoV) RdRp gene (-438 bp), including 63 referenced sequences and 28 sequences amplified from 28 bat faecal samples.","year":2023,"lang":"en","type":"other","venue":"Figshare","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Phylogenetic tree; Phylogenetics; Coronavirus; Gene; Tree (set theory); Genus; Clade; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001714366,0.0007911869,0.000494864,0.001858208,0.001125326,0.0006723881,0.0003612932,0.000709085,0.007429839],"category_scores_gemma":[0.0004509694,0.0003208429,0.0007062868,0.002852523,0.0002198003,0.000401,0.0002921082,0.0009885856,0.005317088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005316417,"about_ca_system_score_gemma":0.0008377874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007455575,"about_ca_topic_score_gemma":0.01112558,"domain_scores_codex":[0.9998487,0.00002409589,0.00001277847,0.00006310418,0.00002521897,0.00002605879],"domain_scores_gemma":[0.999508,0.00009737301,0.00008845341,0.00002153944,0.0001351437,0.0001495245],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004415427,0.0005965563,0.1011159,0.005101827,0.0004681638,0.004313995,0.006947548,0.005963832,0.6225533,0.003741307,0.07490727,0.1698749],"study_design_scores_gemma":[0.000161672,0.00121571,0.5144524,0.001727202,0.0005282256,0.004723357,0.007086982,0.01235015,0.01365572,0.001648091,0.4422911,0.0001593881],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"other","genre_scores_codex":[0.7871773,0.01115128,0.01871498,0.001661117,0.00107193,0.0008235699,0.1259506,0.00163898,0.05181012],"genre_scores_gemma":[0.6651883,0.006789723,0.07114676,0.001013471,0.000179182,0.0003295665,0.224128,0.0005465245,0.03067852],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.007455575,"threshold_uncertainty_score":0.02485526,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1286844567903631,"score_gpt":0.3018142484965755,"score_spread":0.1731297917062124,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}