{"id":"W6961110628","doi":"10.1371/journal.pone.0221429.g003","title":"Multiple correspondence analysis coordinate plot displaying the presence (1) and absence (0) of resistance to four antimicrobials in <i>Campylobacter jejuni</i> isolates from chicken cecal samples from small poultry flocks in Ontario between October 2015 and September 2017 for the first two dimensions (n = 77).","year":2019,"lang":"en","type":"other","venue":"Figshare","topic":"Scientific Computing and Data Management","field":"Decision Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Nalidixic acid; Flock; Antimicrobial; Antibiotic resistance; Correspondence analysis; Drug resistance","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001509798,0.0004701877,0.0009901561,0.0006446644,0.0003026028,0.00070622,0.002287574,0.0002244412,0.006393127],"category_scores_gemma":[0.004792919,0.0003001406,0.0001860246,0.001118115,0.0001206288,0.000219738,0.002011302,0.0003621726,0.0002265096],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007818302,"about_ca_system_score_gemma":0.0001365883,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01771359,"about_ca_topic_score_gemma":0.7010611,"domain_scores_codex":[0.9957879,0.0002856776,0.0009455421,0.001716528,0.0007335667,0.0005307951],"domain_scores_gemma":[0.982301,0.01433326,0.0007860155,0.002227109,0.0002106805,0.0001419279],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0001014737,0.00003642036,0.1588863,0.00003001765,0.0002013899,0.000007178904,0.001120923,0.001153805,0.0001432267,0.00000361435,0.83781,0.0005056224],"study_design_scores_gemma":[0.0005702206,0.00001644878,0.5170206,0.002315587,0.0001361964,5.152941e-7,0.0001607553,0.004110924,0.00001295651,0.00008826284,0.4751909,0.000376618],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.4539229,0.004386125,0.001398757,0.001347243,0.001088415,0.0053734,0.52764,0.000107022,0.004736163],"genre_scores_gemma":[0.8133677,0.00003966723,0.002841065,0.0003114261,0.0002008396,0.0002257088,0.01470829,0.0001545768,0.1681508],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.6833475,"threshold_uncertainty_score":0.999945,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1087801547350193,"score_gpt":0.3200920026989821,"score_spread":0.2113118479639628,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}