{"id":"W6967548449","doi":"10.5061/dryad.nzs7h44qc","title":"Genome reduction is associated with bacterial pathogenicity across different scales of temporal and ecological divergence - between species core gene alignments","year":2020,"lang":"en","type":"dataset","venue":"ePrints Soton (University of Southampton)","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Genome; Pathogenicity island; Pathogenicity; Gene; Divergence (linguistics); Bacterial genome size; Genetic variation; Genome size","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009995416,0.0008861662,0.001107903,0.003058559,0.0008882094,0.001308373,0.00139119,0.001236391,0.01859291],"category_scores_gemma":[0.004767827,0.0003537096,0.00084763,0.00546288,0.0004451726,0.0006813721,0.00165637,0.001061798,0.01173257],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000890511,"about_ca_system_score_gemma":0.001205952,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01910139,"about_ca_topic_score_gemma":0.04002793,"domain_scores_codex":[0.9991288,0.0001521808,0.0000996009,0.0003678971,0.0001216147,0.0001299595],"domain_scores_gemma":[0.9981936,0.0007980453,0.000310862,0.0002649507,0.0002702071,0.0001623968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001262615,0.0001006337,0.07496364,0.006854885,0.0007188093,0.0003703942,0.0004885048,0.002161492,0.004756523,0.001977381,0.8887195,0.01762576],"study_design_scores_gemma":[0.0006461337,0.00009784099,0.2416919,0.001129736,0.0003774127,0.0005291292,0.000645874,0.001373516,0.001385781,0.001895672,0.750138,0.00008892515],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.006550688,0.0004283724,0.00008672025,0.00009704394,0.0000171791,0.000007080422,0.9918076,0.0001158369,0.0008894092],"genre_scores_gemma":[0.005989509,0.0001551166,0.0003386576,0.00005340178,0.000004392955,0.00004588456,0.9929658,0.00003591334,0.000411215],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.01910139,"threshold_uncertainty_score":0.06219953,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04171922390745864,"score_gpt":0.2359382305803257,"score_spread":0.1942190066728671,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}