{"id":"W6968823023","doi":"10.5281/zenodo.16856372","title":"CFIA-NCFAD/nf-ionampliseq: 2.0.1","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Frameshift mutation; Sequence (biology); Filter (signal processing); Pipeline (software); Equating","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.005937629,0.003502467,0.002835016,0.003695703,0.002684811,0.006750663,0.008395683,0.004803822,0.4359379],"category_scores_gemma":[0.02640999,0.004630045,0.003520112,0.002676106,0.001139543,0.006107164,0.00598891,0.005915719,0.528556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002997008,"about_ca_system_score_gemma":0.003123845,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006453078,"about_ca_topic_score_gemma":0.007508456,"domain_scores_codex":[0.9952238,0.0005262928,0.0004592154,0.001307264,0.001908437,0.0005749968],"domain_scores_gemma":[0.990512,0.002892839,0.0007714235,0.002352048,0.002703295,0.0007685388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004985415,0.00003083585,0.000914451,0.0007172863,0.00007200357,0.000110342,0.0001136338,0.0002194579,0.00474787,0.001170343,0.9714093,0.01999591],"study_design_scores_gemma":[0.0002378759,0.00005389478,0.001878779,0.0002721653,0.0000778056,0.000529753,0.00004867497,0.0005280215,0.01433686,0.00257392,0.9793096,0.0001527866],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.001576201,0.001208565,0.05032581,0.001801808,0.001999758,0.000462115,0.3825167,0.5187883,0.04132067],"genre_scores_gemma":[0.008002607,0.0005783895,0.04734156,0.004080333,0.0004287226,0.001203229,0.4518135,0.4461451,0.04040657],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.4359379,"threshold_uncertainty_score":0.804566,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0135949795131491,"score_gpt":0.233074898715587,"score_spread":0.2194799192024379,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}