{"id":"W6976629375","doi":"10.6084/m9.figshare.12775210","title":"Additional file 1 of Longitudinal analysis of subtype C envelope tropism for memory CD4+ T cell subsets over the first 3 years of untreated HIV-1 infection","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"GenBank; clone (Java method); Tropism; T cell; Table (database); Sequence (biology); Virus; Accession number (library science)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001810427,0.001038101,0.00130759,0.001697305,0.001127718,0.001465634,0.001691286,0.001073259,0.8346189],"category_scores_gemma":[0.0278813,0.0004745041,0.0009485282,0.002729768,0.0001990457,0.001552606,0.0008880778,0.0008080786,0.08678652],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009740226,"about_ca_system_score_gemma":0.001824492,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009048159,"about_ca_topic_score_gemma":0.01411668,"domain_scores_codex":[0.9992167,0.0001528505,0.0001574437,0.0001840715,0.0001599198,0.0001289685],"domain_scores_gemma":[0.9840921,0.01089715,0.001334398,0.001228821,0.001968377,0.0004790084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00102551,0.0001678965,0.007843085,0.003964467,0.0001171179,0.0001207873,0.00009572696,0.0005289412,0.0001719238,0.0005590503,0.9705492,0.01485628],"study_design_scores_gemma":[0.01611552,0.001644909,0.1583589,0.01125279,0.0008350087,0.002277552,0.001192514,0.005179141,0.001946955,0.01428156,0.7865341,0.0003810569],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0003643496,0.00001611783,0.0001902281,0.0000577824,0.00001540348,0.0001370993,0.9985353,0.0001286786,0.0005550671],"genre_scores_gemma":[0.02283502,0.0002233243,0.005420285,0.0006722274,0.000139944,0.005026367,0.9540881,0.0007200992,0.01087467],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8346189,"threshold_uncertainty_score":0.2358961,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02712777426674987,"score_gpt":0.2415208795383103,"score_spread":0.2143931052715604,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}