{"id":"W6976749079","doi":"10.60692/889ar-8a230","title":"Carbapenem-resistantAcinetobacter baumanniiat a hospital in Botswana: Detecting a protracted outbreak using whole genome sequencing","year":2023,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; University of British Columbia","funders":"","keywords":"Multilocus sequence typing; Outbreak; Whole genome sequencing; Acinetobacter baumannii; Clade; Phylogenetic tree; Typing; Molecular epidemiology; Incidence (geometry)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006804006,0.0004396017,0.0002291466,0.001394776,0.0007059638,0.0008529157,0.0003754411,0.0005621473,0.000462232],"category_scores_gemma":[0.001427631,0.000316503,0.0002444912,0.001652219,0.00037807,0.0002730825,0.0007230941,0.0003801204,0.0001179502],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009351171,"about_ca_system_score_gemma":0.001019991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03676116,"about_ca_topic_score_gemma":0.07472073,"domain_scores_codex":[0.9996206,0.00006236695,0.00003998723,0.00009460966,0.00005844117,0.0001240581],"domain_scores_gemma":[0.9993377,0.0001097934,0.0001869321,0.00005286019,0.0002023177,0.0001103363],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001840343,0.00006292069,0.9526275,0.0001134775,0.00004130957,0.002386679,0.001581183,0.0002466985,0.03265856,0.0000562852,0.0003533856,0.009687888],"study_design_scores_gemma":[0.0000143997,0.0001496761,0.9900993,0.00009635251,0.00004397906,0.001692134,0.003706521,0.00104974,0.001880447,0.00005004426,0.001206094,0.0000113797],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989831,0.0001154554,0.0001881048,0.0001042092,0.000006125923,0.00002805306,0.0003530317,0.000007705048,0.0002142653],"genre_scores_gemma":[0.9978089,0.0001495835,0.001271446,0.0001200583,0.000004334552,0.00002758475,0.0004912815,0.000004734594,0.0001221565],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03676116,"threshold_uncertainty_score":0.07309437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02539585019572704,"score_gpt":0.2277657346194349,"score_spread":0.2023698844237078,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}