{"id":"W6976818419","doi":"10.6084/m9.figshare.24130112.v1","title":"Additional file 2 of Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenza isolates associated with paediatric otitis media and upper respiratory infection","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; McMaster University; University of Waterloo","funders":"","keywords":"Streptococcus mitis; Streptococcus pneumoniae; Virulence; Haemophilus; Streptococcaceae; Gene; Genotype; Respiratory infection","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001598294,0.001096891,0.001362641,0.002729004,0.000966309,0.00185692,0.001839357,0.001426886,0.8609211],"category_scores_gemma":[0.02769097,0.0005649382,0.0009429052,0.003609427,0.0003071147,0.001814517,0.001341,0.0009212687,0.1472899],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00096785,"about_ca_system_score_gemma":0.001947708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008477785,"about_ca_topic_score_gemma":0.01359185,"domain_scores_codex":[0.9991422,0.0001190825,0.0001901852,0.0002325961,0.0001859261,0.0001299388],"domain_scores_gemma":[0.9829479,0.01231554,0.001039213,0.0009365735,0.002221425,0.0005393677],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004941447,0.0001101261,0.003732918,0.004240146,0.00005883936,0.0001366124,0.00008316725,0.0004190473,0.0002239609,0.0004915474,0.9798321,0.01017737],"study_design_scores_gemma":[0.006179934,0.0004298937,0.05444289,0.00714137,0.000304433,0.00122723,0.0008899414,0.002415575,0.001417576,0.009831673,0.9154599,0.0002595556],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0001586184,0.00001624737,0.0001274643,0.00008355797,0.00002287513,0.00005355687,0.9989372,0.0001569492,0.0004435397],"genre_scores_gemma":[0.007394039,0.00014524,0.002822551,0.0005953105,0.0001253773,0.001130571,0.9807476,0.0006555665,0.006383791],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.8609211,"threshold_uncertainty_score":0.198379,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03288336938694929,"score_gpt":0.2544152500982188,"score_spread":0.2215318807112695,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}