{"id":"W6976910179","doi":"10.6084/m9.figshare.14450739.v1","title":"Additional file 3 of A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Neisseria gonorrhoeae; Minimum inhibitory concentration; Antibiotic resistance; Antimicrobial; Population; Tetracycline; Genome; Phylogenetic tree","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002060876,0.001793029,0.001706908,0.003021485,0.00137714,0.002786258,0.002848143,0.001824778,0.7818822],"category_scores_gemma":[0.01879594,0.0009162242,0.001356242,0.004310255,0.0004152914,0.002877505,0.002226391,0.001587916,0.2223738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009753829,"about_ca_system_score_gemma":0.002167488,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007677781,"about_ca_topic_score_gemma":0.01369258,"domain_scores_codex":[0.9989337,0.0001470483,0.0001443135,0.0003406248,0.000255917,0.0001783101],"domain_scores_gemma":[0.9914269,0.005416027,0.0005336144,0.0007333733,0.00135434,0.000535697],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003815033,0.00005915511,0.002428813,0.003162242,0.00005864082,0.00009860345,0.00009099531,0.0003962371,0.0005274771,0.0007197267,0.9849324,0.00714431],"study_design_scores_gemma":[0.002825465,0.0001862478,0.01897466,0.002172408,0.0001990993,0.0003997828,0.0004132474,0.002509049,0.002372348,0.008873509,0.9608791,0.0001950864],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0001465467,0.00002377486,0.0005720446,0.00007533913,0.00003739637,0.00006453864,0.9968772,0.001485453,0.0007176761],"genre_scores_gemma":[0.003290554,0.0000962654,0.005770171,0.0004335508,0.0000832231,0.0007855204,0.9826094,0.003075839,0.003855555],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.7818822,"threshold_uncertainty_score":0.3111186,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06143707492215295,"score_gpt":0.2883956190581679,"score_spread":0.2269585441360149,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}