{"id":"W6976942611","doi":"10.6084/m9.figshare.26991586","title":"Additional file 1 of Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Linguistic, Cultural, and Literary Studies","field":"Social Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vector Institute; University of Toronto; University Health Network","funders":"Medical Research Council","keywords":"Epigenetics; Nuclease; Genome; Transcription factor; Embryonic stem cell; Transcription (linguistics); Base pair; DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009088399,0.00144188,0.001011422,0.001064469,0.0007428564,0.001289807,0.002194755,0.001153128,0.7979217],"category_scores_gemma":[0.006655318,0.0005877147,0.0009044214,0.001881662,0.0002094235,0.001361689,0.0008188842,0.0009401849,0.2129892],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008656761,"about_ca_system_score_gemma":0.001142847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007650734,"about_ca_topic_score_gemma":0.01264454,"domain_scores_codex":[0.9997004,0.00005184349,0.00002560205,0.00009392264,0.00008134267,0.00004683137],"domain_scores_gemma":[0.9974132,0.001829631,0.0001044857,0.0002306652,0.0003299466,0.00009208442],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004264803,0.0001081552,0.002717181,0.001873036,0.00005170957,0.000134088,0.00005754059,0.006227145,0.0007936332,0.002520802,0.9697471,0.01534315],"study_design_scores_gemma":[0.002011403,0.000233059,0.006465557,0.0008329247,0.000129494,0.0003960163,0.0001990511,0.02635562,0.003498285,0.01814491,0.9416186,0.0001151119],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0003867638,0.00003134385,0.002604684,0.00007773298,0.00003868199,0.00005648575,0.9927402,0.001913972,0.002150214],"genre_scores_gemma":[0.01370522,0.0001799782,0.01536641,0.0003298432,0.00005801461,0.0008726429,0.9549517,0.00333401,0.01120218],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.7979217,"threshold_uncertainty_score":0.2882402,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06311473216965122,"score_gpt":0.2990980644055652,"score_spread":0.235983332235914,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}