{"id":"W6976950980","doi":"10.6084/m9.figshare.19976831","title":"Additional file 2 of Evaluating the potential of third generation metagenomic sequencing for the detection of BRD pathogens and genetic determinants of antimicrobial resistance in chronically ill feedlot cattle","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"Pasteurella multocida; Metagenomics; Antibiotic resistance; Third generation; Antimicrobial; DNA sequencing; Beef cattle; Feedlot; Pasteurella","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002298995,0.001066925,0.001190158,0.002346618,0.001080991,0.002095331,0.001722862,0.001408192,0.8229877],"category_scores_gemma":[0.02045604,0.0006563825,0.0009508397,0.002840167,0.0003109432,0.001347853,0.001100606,0.0007978768,0.1174193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009282195,"about_ca_system_score_gemma":0.001739853,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00839676,"about_ca_topic_score_gemma":0.01692837,"domain_scores_codex":[0.9992035,0.0001300433,0.0001187801,0.0002212913,0.0002100151,0.0001164165],"domain_scores_gemma":[0.9835454,0.01250221,0.000884994,0.0009572873,0.001698327,0.0004118588],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005937958,0.0001429973,0.004947113,0.004296681,0.000095802,0.000127836,0.000113677,0.0007273397,0.0006802754,0.0008796171,0.9756296,0.01176533],"study_design_scores_gemma":[0.008150281,0.0005859571,0.07296556,0.0051979,0.0005033915,0.0007331347,0.0008322591,0.004553218,0.00309976,0.01325261,0.8898296,0.0002963395],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.0002382617,0.00001205931,0.0003164188,0.00005768392,0.00002157068,0.00005825883,0.9984356,0.0003206892,0.0005395833],"genre_scores_gemma":[0.01035603,0.0001062622,0.007902643,0.0005513433,0.00009014193,0.001979531,0.9702469,0.00126589,0.007501305],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8229877,"threshold_uncertainty_score":0.2524865,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04763682792849945,"score_gpt":0.2899118502424847,"score_spread":0.2422750223139853,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}