{"id":"W6976957603","doi":"10.6084/m9.figshare.26727844","title":"Additional file 4 of Extensive remodeling of sugar metabolism through gene loss and horizontal gene transfer in a eukaryotic lineage","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"","keywords":"Phylogenetics; Phylogenetic tree; Horizontal gene transfer; Clade; Lineage (genetic); Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000262888,0.0001002197,0.0001892215,0.00005681783,0.00002279695,0.00001778306,0.00006853513,0.00007575027,0.87664],"category_scores_gemma":[0.0002735467,0.00008765027,0.00005339253,0.0001457538,0.0000180659,0.0001993016,0.00003012258,0.00008742701,0.0001168928],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001161323,"about_ca_system_score_gemma":0.00006736568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001784943,"about_ca_topic_score_gemma":0.0000210625,"domain_scores_codex":[0.9992449,0.00002392374,0.0002240511,0.0002270807,0.0001562368,0.000123856],"domain_scores_gemma":[0.9994768,0.0002658354,0.00002934844,0.0001026222,0.0001000562,0.00002534999],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003562127,0.00001662631,5.523548e-7,0.0003475068,0.00001417327,0.00004857088,0.0005300014,0.0001186779,0.1483931,0.00005702057,0.8500357,0.0004023969],"study_design_scores_gemma":[0.000496959,0.0001508002,0.003010361,0.004134453,0.0000510424,0.0001623249,0.0001418521,0.003647812,0.8717141,0.0007328907,0.1153723,0.0003851019],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.01921518,0.001083161,0.00003376039,0.000008502962,0.00008432991,0.00009921322,0.9791827,0.00002326348,0.0002699227],"genre_scores_gemma":[0.3040967,0.00001852483,0.00480699,0.00006693957,0.0003975448,0.0001290213,0.6903443,0.00002662685,0.0001133289],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8765231,"threshold_uncertainty_score":0.3574274,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02014846765903674,"score_gpt":0.228816630112978,"score_spread":0.2086681624539413,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}