{"id":"W6977079202","doi":"10.6084/m9.figshare.26554925.v1","title":"Additional file 2 of Patterns of abundance, chromosomal localization, and domain organization among c-di-GMP-metabolizing genes revealed by comparative genomics of five alphaproteobacterial orders","year":2024,"lang":"en","type":"dataset","venue":"Figshare","topic":"History of Computing Technologies","field":"Computer Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Comparative genomics; Gene; Domain (mathematical analysis); Genomics; Table (database); Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001814962,0.001817295,0.001808273,0.003230757,0.00133216,0.002582755,0.002852934,0.001976235,0.6005442],"category_scores_gemma":[0.01417774,0.0008467977,0.001418594,0.005409763,0.0005194729,0.002005009,0.001722744,0.001885624,0.1409403],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001376885,"about_ca_system_score_gemma":0.002695216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01152393,"about_ca_topic_score_gemma":0.01997614,"domain_scores_codex":[0.9991155,0.0001087353,0.0001368757,0.0003313057,0.0001506717,0.0001569551],"domain_scores_gemma":[0.9906808,0.006107692,0.0006420638,0.0007846183,0.001360981,0.0004238798],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002074044,0.0000724299,0.003057725,0.002993732,0.00008060491,0.00005370392,0.00005418405,0.0004763758,0.0003012742,0.0006391255,0.9888786,0.003184686],"study_design_scores_gemma":[0.003292301,0.000162583,0.02561279,0.002367083,0.0002608135,0.0003253296,0.0003679349,0.001488192,0.001191846,0.006767701,0.9580339,0.0001295169],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00005553123,0.00000720392,0.00003841616,0.00001798626,0.000005151076,0.000008695662,0.9996843,0.00007429028,0.0001083866],"genre_scores_gemma":[0.0009518007,0.00003083246,0.0006873684,0.00008286886,0.00001090725,0.0002353249,0.996979,0.0001724469,0.0008493848],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.6005442,"threshold_uncertainty_score":0.5697752,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01052729326826259,"score_gpt":0.2127736003909196,"score_spread":0.202246307122657,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}