{"id":"W6977280851","doi":"10.6084/m9.figshare.20479797.v1","title":"Additional file 2 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Evasion and Academic Success Factors","field":"Social Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Simon Fraser University; University of British Columbia","funders":"","keywords":"Hypervariable region; DNA sequencing; Genome; Genomics; Base sequence; Genomic sequencing; Sequencing by hybridization","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00228369,0.001362713,0.001300137,0.002986609,0.001300614,0.001995088,0.002241097,0.001452399,0.8825807],"category_scores_gemma":[0.03044794,0.0008503914,0.001106691,0.004248339,0.0005293488,0.002001451,0.001263824,0.001119241,0.2322072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008865432,"about_ca_system_score_gemma":0.001730799,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006136449,"about_ca_topic_score_gemma":0.01252923,"domain_scores_codex":[0.9991606,0.0002006734,0.0001020415,0.0002070255,0.0001883189,0.0001412257],"domain_scores_gemma":[0.9665773,0.02861837,0.0008921734,0.001426294,0.001802582,0.0006832906],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002295615,0.0001054818,0.002929766,0.002332823,0.00003827455,0.00008010462,0.0001466779,0.0005762862,0.0002140536,0.001154714,0.9830869,0.009105372],"study_design_scores_gemma":[0.003025148,0.0002381892,0.02660261,0.002455294,0.0002042215,0.0005070174,0.0009380968,0.002520716,0.001888377,0.02273652,0.9386504,0.0002333669],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0002529892,0.00001642814,0.0008100699,0.0001011731,0.00002306568,0.00007066131,0.9964046,0.0009696526,0.001351385],"genre_scores_gemma":[0.01352596,0.0001581615,0.01274494,0.0006397159,0.0001025431,0.002438955,0.9523595,0.004351688,0.01367867],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8825807,"threshold_uncertainty_score":0.1674844,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06836925964009515,"score_gpt":0.2746263364023473,"score_spread":0.2062570767622522,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}