{"id":"W6977308004","doi":"10.6084/m9.figshare.13240329.v1","title":"Additional file 2 of Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"DNA; DNA sequencing; Genome; Bacteria; DNA Transposable Elements","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002403432,0.001612112,0.001758086,0.003149424,0.001472875,0.002332377,0.002784817,0.001984805,0.862766],"category_scores_gemma":[0.01943747,0.001231652,0.001224843,0.004584991,0.000559744,0.002069044,0.001537518,0.001612313,0.2798723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001154659,"about_ca_system_score_gemma":0.001983355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004779845,"about_ca_topic_score_gemma":0.006809411,"domain_scores_codex":[0.9989191,0.0001548,0.0001437681,0.0003244872,0.0002824102,0.0001754353],"domain_scores_gemma":[0.9815155,0.01416264,0.0007646583,0.00138839,0.001603773,0.0005650381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000417357,0.0001331665,0.001348707,0.002735363,0.00004822378,0.00009997452,0.00008285034,0.000620896,0.0009691124,0.001048514,0.9840337,0.00846217],"study_design_scores_gemma":[0.003395954,0.0003140505,0.0155176,0.001854248,0.0002025606,0.0005619857,0.0003619618,0.002419629,0.00495565,0.01336708,0.9567949,0.0002544576],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.0001562694,0.00001711235,0.0008638104,0.00007977044,0.00003476574,0.00006404627,0.9963713,0.001418791,0.0009940899],"genre_scores_gemma":[0.005176175,0.0001131269,0.006247212,0.0004898181,0.00008004087,0.001161829,0.9760908,0.003933538,0.00670753],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.862766,"threshold_uncertainty_score":0.1957477,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01736757246639365,"score_gpt":0.2360105532828126,"score_spread":0.218642980816419,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}