{"id":"W6977410774","doi":"10.6084/m9.figshare.18865037","title":"Additional file 1 of Compositional analysis of the tonsil microbiota in relationship to Streptococcus suis disease in nursery pigs in Ontario","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Firmicutes; Streptococcus suis; Relative species abundance; Streptococcus; Microbiome; Abundance (ecology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001020366,0.0007323292,0.0008298066,0.001856052,0.001108711,0.00134128,0.00176347,0.0008299944,0.7992663],"category_scores_gemma":[0.01888774,0.0004056741,0.0009229559,0.003191224,0.0002769357,0.00111385,0.0009914752,0.000500888,0.07100331],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002054419,"about_ca_system_score_gemma":0.003764411,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1169139,"about_ca_topic_score_gemma":0.2080496,"domain_scores_codex":[0.9994561,0.00006939197,0.00008813171,0.000136823,0.0001252699,0.0001243455],"domain_scores_gemma":[0.9886466,0.007117429,0.0009571887,0.0006418115,0.002163301,0.0004736588],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0003711351,0.00007368508,0.01835523,0.003850897,0.00008067832,0.0001132429,0.0002010637,0.0004021795,0.0001621762,0.0003889571,0.9660511,0.009949527],"study_design_scores_gemma":[0.004050504,0.0002950307,0.2847992,0.007023138,0.0003828704,0.0007168052,0.00219398,0.003102121,0.0008119373,0.004139005,0.6922922,0.0001932411],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0003806078,0.00000968215,0.00007861499,0.00004887627,0.00001095925,0.00004232427,0.9989083,0.00006657704,0.0004541498],"genre_scores_gemma":[0.02594822,0.0001407067,0.003419536,0.0003297286,0.00007744161,0.001668358,0.9544051,0.0004151997,0.01359566],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.8830861,"threshold_uncertainty_score":0.2863223,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03225009033414992,"score_gpt":0.2676026476274957,"score_spread":0.2353525572933458,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}