{"id":"W6977609233","doi":"10.6084/m9.figshare.12399260","title":"Additional file 4 of Similar yet different: phylogenomic analysis to delineate Salmonella and Citrobacter species boundaries","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Libraries and Information Services","field":"Arts and Humanities","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; McGill University; Université Laval; Health Canada","funders":"","keywords":"Genome; Citrobacter; Open reading frame; Salmonella; Phylogenomics; Table (database); Phylogenetics; Phylogenetic tree","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001708979,0.001481947,0.001592959,0.003574055,0.00146196,0.002610432,0.002616755,0.001591765,0.8584009],"category_scores_gemma":[0.01964049,0.0007997425,0.001467162,0.005630863,0.0004474197,0.002396227,0.001775699,0.001427146,0.2097893],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001187895,"about_ca_system_score_gemma":0.002214836,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01241759,"about_ca_topic_score_gemma":0.02073481,"domain_scores_codex":[0.9991598,0.0001243426,0.0001192348,0.0002582868,0.0001662108,0.0001721584],"domain_scores_gemma":[0.9863387,0.009880464,0.0006844345,0.0008694837,0.001709929,0.0005170153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0003860122,0.0001151108,0.003535916,0.003811945,0.00009027008,0.0001021819,0.0001309386,0.0006870544,0.0003758536,0.000744583,0.9833111,0.006709029],"study_design_scores_gemma":[0.004788969,0.0002719699,0.03422513,0.003038571,0.0003604823,0.0005494831,0.0009213315,0.00283643,0.001746789,0.01251337,0.9384931,0.0002544858],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.0001351734,0.00001173035,0.0002105426,0.00004739986,0.00001813898,0.00003427537,0.9986265,0.0004088121,0.0005073315],"genre_scores_gemma":[0.005527988,0.00008955434,0.00441197,0.0003659348,0.00006350341,0.0007273225,0.9822593,0.001795766,0.004758704],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8584009,"threshold_uncertainty_score":0.2019738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0457546128695302,"score_gpt":0.1846176809606628,"score_spread":0.1388630680911326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}