{"id":"W7033231604","doi":"","title":"Pseudomonas aeruginosa Prairie Epidemic Strain Population Dynamics and Evolution of Disease in Cystic Fibrosis Airways of Adult Patients","year":2018,"lang":"en","type":"dissertation","venue":"MacSphere (McMaster University)","topic":"Recycling and Waste Management Techniques","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Cystic fibrosis; Pseudomonas aeruginosa; Exacerbation; Population; Genome; Burkholderia cepacia complex; Prophage; Whole genome sequencing; Single-nucleotide polymorphism; Strain (injury)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009970095,0.0002166407,0.0002857201,0.000194984,0.00005115641,0.000009212878,0.0002231627,0.0001743368,0.00158389],"category_scores_gemma":[0.00005057463,0.0002477544,0.00007640092,0.0004036797,0.0001133445,0.000244537,0.0001190764,0.0001245304,0.000005559317],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004606406,"about_ca_system_score_gemma":0.000013803,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002232953,"about_ca_topic_score_gemma":0.005813119,"domain_scores_codex":[0.9986989,0.0001044265,0.0003395725,0.0003918024,0.0002810546,0.0001842231],"domain_scores_gemma":[0.9991945,0.00003677894,0.0004474794,0.0002073147,0.00003683773,0.00007707346],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003386636,0.0001209658,0.8572419,0.0003880343,0.00001558374,0.000002779127,0.0001980536,0.0004007653,0.0000742177,0.0008521634,0.0001438291,0.1402231],"study_design_scores_gemma":[0.0006789353,0.0002249722,0.988476,0.0006760975,0.0001425858,7.573284e-8,0.0009457686,0.00673977,0.0001065725,0.00106061,0.0006375333,0.0003110808],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9698541,0.00001969691,0.00107981,0.00001447642,0.00009056675,0.0005015217,0.0001841654,0.00003744578,0.02821817],"genre_scores_gemma":[0.9751735,0.00003142206,0.001564903,0.00000420815,0.000008926636,0.000002298473,0.0007626474,0.00001948014,0.02243263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.139912,"threshold_uncertainty_score":0.9999975,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004637559597304808,"score_gpt":0.1968308948615992,"score_spread":0.1921933352642944,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}