{"id":"W7062732622","doi":"","title":"Using Whole Genome Sequencing to Track Colibacillosis on Saskatchewan Broiler Flocks","year":2022,"lang":"en","type":"dissertation","venue":"University Library (University of Saskatchewan)","topic":"Advanced Power Generation Technologies","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Plasmid; Escherichia coli; Flock; Virulence; Whole genome sequencing; Pathogenic Escherichia coli; Nanopore sequencing; Outbreak","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005958873,0.000534962,0.0006673688,0.001311133,0.0005476564,0.00003702289,0.001194663,0.0005239495,0.002256004],"category_scores_gemma":[0.000006213792,0.0008605355,0.0003067928,0.001323758,0.00009810672,0.00121881,0.0003010091,0.0008372533,0.00008568212],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009688603,"about_ca_system_score_gemma":0.0005556883,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004630238,"about_ca_topic_score_gemma":0.002339484,"domain_scores_codex":[0.9980555,0.00006802706,0.0002407545,0.0006760531,0.0004655524,0.0004941239],"domain_scores_gemma":[0.998737,0.00005769086,0.0002095813,0.0006920281,0.00007307334,0.0002306454],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"qualitative","study_design_scores_codex":[0.001114331,0.0002127606,0.0003857886,0.001070875,0.001051726,0.0007410171,0.2213487,0.6025403,0.1536467,0.0002113685,0.01129245,0.006383948],"study_design_scores_gemma":[0.0008061731,0.0002366236,0.000378597,0.0001927018,0.0002195296,0.000005444578,0.8772784,0.001692578,0.01729856,0.0001373523,0.1004298,0.001324204],"study_design_candidate":"qualitative","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9821491,0.0001663094,0.002701437,0.0001403314,0.0006636786,0.0006294934,0.001571115,0.001935424,0.01004314],"genre_scores_gemma":[0.818441,0.0001606276,0.03105126,0.0001064647,0.00009469915,6.443282e-7,0.003233854,0.0002238243,0.1466876],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6559297,"threshold_uncertainty_score":0.9993845,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01228135433351065,"score_gpt":0.1891920174668665,"score_spread":0.1769106631333558,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}