{"id":"W7072276687","doi":"","title":"Whole genome sequencing of SARS-CoV-2 for Canada's COVID-19 genomic surveillance","year":2023,"lang":"en","type":"dissertation","venue":"Mspace (University of Manitoba)","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Public Health Agency; Public Health Agency of Canada; University of Manitoba; Research Manitoba","keywords":"Nanopore sequencing; Whole genome sequencing; Genomics; DNA sequencing; Genome; Genomic sequencing; Protocol (science)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001036495,0.0005240109,0.0004580275,0.001039727,0.001918172,0.001549176,0.000569172,0.0005315137,0.002099822],"category_scores_gemma":[0.001174047,0.0002578121,0.0007046561,0.001766646,0.0003807257,0.0003870586,0.0007693619,0.001037711,0.0009442097],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01085879,"about_ca_system_score_gemma":0.0415514,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7526195,"about_ca_topic_score_gemma":0.891727,"domain_scores_codex":[0.9989259,0.00004916919,0.00002206427,0.0001697822,0.0006125497,0.0002205631],"domain_scores_gemma":[0.9989734,0.00003365355,0.00004524022,0.00004634691,0.0007810804,0.0001203169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009065846,0.0002663257,0.0453993,0.0008637164,0.0001805684,0.0006979089,0.002376035,0.01099817,0.694867,0.009420567,0.05262522,0.1813986],"study_design_scores_gemma":[0.0001604719,0.0008656903,0.2681046,0.0005969217,0.0004103671,0.0006507639,0.004814455,0.02791831,0.23996,0.002447286,0.4538113,0.0002598369],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7820513,0.005316601,0.06781749,0.004389454,0.0005818407,0.001796477,0.08537421,0.002222896,0.05044973],"genre_scores_gemma":[0.6363079,0.007031534,0.197272,0.00193105,0.00007259147,0.0008061566,0.1246679,0.0005731841,0.03133771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2473805,"threshold_uncertainty_score":0.4976747,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05638406006375299,"score_gpt":0.3031201065048156,"score_spread":0.2467360464410626,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}