{"id":"W7074042420","doi":"","title":"Clostridium difficile: Investigating Transmission Patterns Between Infected and Colonized Patients Using Whole Genome Sequencing","year":2018,"lang":"en","type":"article","venue":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","topic":"Prenatal Screening and Diagnostics","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Clostridium difficile; Whole genome sequencing; Multilocus sequence typing; Virulence; Transmission (telecommunications); Typing; Colonization; Asymptomatic carrier","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006088085,0.0002001263,0.0005700914,0.0004976598,0.0009747771,0.000009472823,0.0006185423,0.0003084644,0.0001946333],"category_scores_gemma":[0.0001808434,0.0002328101,0.0001746913,0.0008333224,0.002056732,0.0002503333,0.0007322398,0.0007279143,0.000004710132],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002643029,"about_ca_system_score_gemma":0.000430039,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01139338,"about_ca_topic_score_gemma":0.001100275,"domain_scores_codex":[0.9979048,0.0003662533,0.0001852828,0.0003939617,0.000708359,0.0004413702],"domain_scores_gemma":[0.9974065,0.0005525607,0.0002970465,0.0004107163,0.0009616502,0.0003715199],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004628156,0.00161971,0.7875031,0.001785478,0.001187995,0.0003529911,0.07648443,0.0008140323,0.1001492,0.0001553296,0.001477028,0.02384263],"study_design_scores_gemma":[0.0166267,0.004746342,0.831613,0.003581414,0.001477662,0.00002234851,0.1107826,0.01926882,0.002988203,0.00008608343,0.007971034,0.0008357748],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905227,0.00007676645,0.006560933,0.001231293,0.00002189389,0.0004655721,0.0004953165,0.00004407048,0.0005814252],"genre_scores_gemma":[0.9915318,0.0002682,0.00745774,0.00001299864,0.00004669882,4.138391e-9,0.0002177555,0.00001355429,0.0004511986],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09716097,"threshold_uncertainty_score":0.9951898,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06843773467283465,"score_gpt":0.2809612526424519,"score_spread":0.2125235179696173,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}