{"id":"W7074122800","doi":"","title":"Does complete plastid genome sequencing improve species discrimination and phylogenetic resolution in Araucaria?","year":2015,"lang":"en","type":"article","venue":"Civil War Book Review","topic":"Geological Studies and Exploration","field":"Earth and Planetary Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Arnold Arboretum; University of Edinburgh; Rural and Environment Science and Analytical Services Division; National Science Foundation","keywords":"Plastid; Phylogenetic tree; Nuclear gene; Genome; DNA barcoding; Coalescent theory; Clade; Monophyly; Lineage (genetic)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003579425,0.0001084592,0.0002253598,0.00002781756,0.00008688794,0.00001988321,0.00007077297,0.00003236442,0.0002560138],"category_scores_gemma":[0.0001251422,0.00006110784,0.0000262282,0.0001007063,0.00007645615,0.0001567475,0.00002224582,0.00007260079,0.00008505604],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002131063,"about_ca_system_score_gemma":0.00001974167,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004084041,"about_ca_topic_score_gemma":0.003403064,"domain_scores_codex":[0.9991224,0.00009166618,0.0002328776,0.0002191581,0.0001448284,0.0001890318],"domain_scores_gemma":[0.9996658,0.00004452635,0.00007756043,0.00009316147,0.00003984426,0.00007909637],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003559821,0.0002002358,0.5519237,0.01637414,0.0002127903,0.0001776764,0.01340274,0.01314065,0.004567396,0.001458735,0.09959122,0.2985948],"study_design_scores_gemma":[0.0003281439,0.0002857033,0.5404223,0.0007530397,0.00004802148,0.000006968944,0.0004303951,0.003646289,0.00000763572,0.001337673,0.4524369,0.0002969306],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.05405617,0.9308977,0.0002813345,0.003803553,0.0007033222,0.0009542237,0.00007155595,0.00004549785,0.009186722],"genre_scores_gemma":[0.6621789,0.3342918,0.0003696585,0.002065759,0.0003366469,0.00001417239,0.000240452,0.000004232837,0.0004984285],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.6081227,"threshold_uncertainty_score":0.2803171,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06158635846235967,"score_gpt":0.225577931626525,"score_spread":0.1639915731641653,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}