{"id":"W7074208291","doi":"","title":"Cryptococcus gattii with bimorphic colony types in a dog in Western Oregon: additional evidence for expansion of the Vancouver Island outbreak","year":2009,"lang":"en","type":"article","venue":"PubMed Central","topic":"Prenatal Screening and Diagnostics","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Outbreak; Cryptococcosis; Multilocus sequence typing; Cryptococcus gattii; Typing; Genotype","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001585507,0.00009947369,0.000188969,0.00005762102,0.00002104375,0.000007511772,0.00009440372,0.00006422811,0.00006157349],"category_scores_gemma":[0.0007049999,0.00006210087,0.00004330243,0.0001963435,0.00005922008,0.00009050232,0.00001964679,0.0001319493,0.000001218101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001042961,"about_ca_system_score_gemma":0.0001854693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008850383,"about_ca_topic_score_gemma":0.003706032,"domain_scores_codex":[0.9989212,0.00002962326,0.0001887651,0.000166856,0.0002194407,0.0004741547],"domain_scores_gemma":[0.9992723,0.0003449136,0.00007124799,0.0001554358,0.0000401051,0.0001160048],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001809536,0.0002605782,0.9695135,0.00008029987,0.00001706725,0.00004847207,0.0003307778,0.0004002707,0.00008561786,0.000112293,0.01878105,0.008560492],"study_design_scores_gemma":[0.002278144,0.0002365221,0.9942325,0.0009276227,0.00002978327,0.00001190119,0.00002527536,0.0001984649,0.0005807688,0.0001817854,0.001216851,0.0000803349],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964346,0.0002206656,0.0002288026,0.00121814,0.0001879292,0.001227604,0.0002130545,0.00001626735,0.0002529867],"genre_scores_gemma":[0.998678,0.00001732496,0.0003661633,0.0004252036,0.0001309303,0.0001927908,0.00003820682,0.00000714746,0.0001442254],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.024719,"threshold_uncertainty_score":0.25324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02605556231221695,"score_gpt":0.2628127630003569,"score_spread":0.2367572006881399,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}