{"id":"W7079619610","doi":"10.5281/zenodo.17025356","title":"Somatic mutation datasets from gastroesophageal adenocarcinoma tumors and paired patient-derived organoid","year":2025,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Geochemistry and Geologic Mapping","field":"Computer Science","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Somatic cell; Adenocarcinoma; Mutation; Organoid; Germline mutation; Cancer","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000854666,0.00201118,0.001616081,0.002509522,0.000719889,0.001205642,0.002527001,0.002482059,0.01455966],"category_scores_gemma":[0.002550339,0.000478918,0.001552273,0.003515858,0.0005252976,0.0004753091,0.001329142,0.001305796,0.01297577],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0010293,"about_ca_system_score_gemma":0.001805086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01657364,"about_ca_topic_score_gemma":0.02681931,"domain_scores_codex":[0.9992781,0.0001017276,0.00007271495,0.000230628,0.0002007516,0.0001160933],"domain_scores_gemma":[0.9991124,0.0002990945,0.00008780464,0.0002138659,0.0001674905,0.0001193443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00120516,0.0002711855,0.007235638,0.003183017,0.0004666956,0.0008630627,0.0001062991,0.006401897,0.005008626,0.001204572,0.952423,0.02163093],"study_design_scores_gemma":[0.001891076,0.0002714865,0.04207263,0.0007508823,0.0006249897,0.002904857,0.0002396537,0.009524341,0.007842601,0.004494696,0.9292237,0.0001592534],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.004545375,0.0004787339,0.0003938343,0.000116688,0.00003982097,0.00004043194,0.9930114,0.0005934024,0.0007802846],"genre_scores_gemma":[0.002124983,0.0001138106,0.0004842757,0.00004411828,0.000004091639,0.00006472895,0.9967835,0.0000363217,0.0003441614],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.01657364,"threshold_uncertainty_score":0.04870689,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01547061049215263,"score_gpt":0.2097728917595764,"score_spread":0.1943022812674238,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}