{"id":"W7082035369","doi":"10.5281/zenodo.17137451","title":"cestari-lab/genome-assembly: Genome assembly","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Image Processing and 3D Reconstruction","field":"Computer Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Pipeline (software); Synteny; Genome; Sequence assembly; DNA Transposable Elements; Hybrid genome assembly; Reference genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","scholarly_communication","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000561919,0.0003300998,0.0003218238,0.0008614076,0.00161558,0.00243328,0.002975259,0.0002500639,0.00663098],"category_scores_gemma":[0.0002279587,0.0003534609,0.00009345896,0.001042061,0.0001514215,0.0003779858,0.002113826,0.0005261616,0.01067489],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000189532,"about_ca_system_score_gemma":0.00004726234,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005247138,"about_ca_topic_score_gemma":0.000001390356,"domain_scores_codex":[0.9973606,0.0003358542,0.0003330664,0.0009293441,0.000490155,0.0005509381],"domain_scores_gemma":[0.9980289,0.00001961692,0.0002880497,0.0009967691,0.0004742332,0.0001924581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001209463,0.0001128849,3.131591e-7,0.0003034241,0.0001188146,0.00003806238,0.0003842343,0.00001654688,0.002273436,0.007222412,0.6854376,0.3040802],"study_design_scores_gemma":[0.0003175134,0.00008641157,0.00002793413,0.0001181518,0.00002071322,0.0001326012,0.00004199742,0.000702526,0.0001653034,0.0001786755,0.9978427,0.0003654231],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.00002377803,0.0005783198,0.2004659,0.0004564842,0.0004705075,0.0003339518,0.0001397979,0.002630517,0.7949007],"genre_scores_gemma":[0.005926485,0.0008063153,0.01884523,0.0004708041,0.0009796418,2.162009e-7,0.002446453,0.00815003,0.9623748],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.3124051,"threshold_uncertainty_score":0.9998918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02114151582034731,"score_gpt":0.2368441815433849,"score_spread":0.2157026657230376,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}