{"id":"W7092212621","doi":"10.6084/m9.figshare.30370893.v1","title":"Additional file 4 of Reference genome bias in light of species-specific chromosomal reorganization and translocations","year":2025,"lang":"","type":"article","venue":"Figshare","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada","funders":"","keywords":"Genome; Chromosomal translocation; Identification (biology); DNA; Whole genome sequencing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.002113147,0.001499759,0.001744005,0.004139641,0.001064313,0.002220219,0.002374208,0.001562044,0.7973831],"category_scores_gemma":[0.02851622,0.0006525546,0.001273655,0.006180568,0.0003162831,0.001664927,0.001516199,0.001102006,0.2163864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008570881,"about_ca_system_score_gemma":0.00148832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005991491,"about_ca_topic_score_gemma":0.01150237,"domain_scores_codex":[0.9985464,0.0002314611,0.0002340773,0.0005065762,0.0003150228,0.0001666357],"domain_scores_gemma":[0.9765289,0.01747557,0.0009433877,0.002089318,0.002589973,0.000372867],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003208454,0.00005300575,0.002479995,0.003660195,0.0001113123,0.000115113,0.0001199831,0.0005233334,0.0005970741,0.0007050926,0.9803383,0.01097566],"study_design_scores_gemma":[0.001745893,0.0001283706,0.02372759,0.001855518,0.000269416,0.0005316635,0.0003510886,0.001311652,0.00218296,0.00816131,0.9595841,0.0001505109],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0001688875,0.00002912972,0.000452545,0.00005283814,0.00002754684,0.00002566211,0.9977355,0.0008684245,0.0006394628],"genre_scores_gemma":[0.004521922,0.0000875053,0.003409311,0.0002387269,0.00005476594,0.0004497174,0.9848823,0.001875086,0.004480686],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.2026169,"threshold_uncertainty_score":0.2890084,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05126073258089929,"score_gpt":0.2174170743785167,"score_spread":0.1661563417976173,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}