{"id":"W7097553936","doi":"","title":"Whole-Genome Phylogenomic Heterogeneity of Neisseria gonorrhoeae Isolates with Decreased Cephalosporin Susceptibility Collected in","year":2016,"lang":"en","type":"article","venue":"","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Neisseria gonorrhoeae; Clade; Multilocus sequence typing; Phylogenetics; Phylogenomics; Neisseriaceae; Strain (injury); Typing; Whole genome sequencing","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001235739,0.0002564613,0.0002964149,0.001072304,0.0007079381,0.0004218889,0.0002097101,0.0002318345,0.0009628114],"category_scores_gemma":[0.0004076724,0.0001328264,0.0002722981,0.001843681,0.0002609658,0.00009233727,0.0003085719,0.0002540098,0.0001117481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002147146,"about_ca_system_score_gemma":0.003232343,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.7137153,"about_ca_topic_score_gemma":0.8453075,"domain_scores_codex":[0.9997723,0.000006962378,0.000005067349,0.00006718159,0.00006243169,0.00008604719],"domain_scores_gemma":[0.9998221,0.00001266402,0.00002586438,0.00000938622,0.00007637601,0.0000536396],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009672545,0.0000959664,0.4534613,0.0001830518,0.0001883521,0.0004443476,0.002459297,0.0004848551,0.5157678,0.0002205717,0.001462206,0.02426498],"study_design_scores_gemma":[0.000002895214,0.00002580685,0.9966785,0.000004061329,0.00002235133,0.0001015184,0.0004276548,0.0001392512,0.001549811,0.000008853965,0.00103509,0.000004240079],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942008,0.0002064738,0.0001950838,0.00003529145,0.000002829355,0.00002225169,0.004678868,0.00001058714,0.0006478438],"genre_scores_gemma":[0.9881512,0.0002665078,0.0009887632,0.00007490063,0.000002579092,0.00001589624,0.009108693,0.000009631221,0.001381897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7137153,"threshold_uncertainty_score":0.5759414,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01528846308888994,"score_gpt":0.2590583550791538,"score_spread":0.2437698919902639,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}