{"id":"W7106138025","doi":"10.48620/92469","title":"Pleiotropic Effects on Tachyzoite and Host Cell Proteomes in Knock-Out Clones of the Open Reading Frames 297720 and 319730 Constitutively Expressed in T. gondii ShSp1 Tachyzoites.","year":2025,"lang":"en","type":"article","venue":"Open Access CRIS of the University of Bern","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"","keywords":"Open reading frame; Gene; Toxoplasma gondii; Proteome; Intracellular parasite; Gene expression; Intracellular","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002968745,0.0001555276,0.000520811,0.0002126967,0.0002637058,0.00005977919,0.002471395,0.0001402941,0.00003345064],"category_scores_gemma":[0.0002922813,0.0001144821,0.00005094716,0.000291575,0.001105265,0.0004433416,0.007170049,0.0003430316,0.000002005841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005216458,"about_ca_system_score_gemma":0.0001352011,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009044327,"about_ca_topic_score_gemma":0.001782823,"domain_scores_codex":[0.9988169,0.0003872143,0.0002059167,0.0003102646,0.00006195914,0.0002177445],"domain_scores_gemma":[0.9987094,0.0005910139,0.0002484058,0.0003674729,0.00006852602,0.00001512558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009888711,0.0002714808,0.7652519,0.0006155872,0.0002447377,0.000009507467,0.003666866,0.00002269287,0.2233894,0.002059303,0.002083779,0.001395905],"study_design_scores_gemma":[0.003355867,0.0001003238,0.5391816,0.001017304,0.00005023791,8.303563e-7,0.002124551,0.00000479611,0.4511893,0.0003159492,0.00254017,0.0001190337],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897975,0.0007348129,0.000008839048,0.001151117,0.00009681362,0.001715561,0.0001295147,0.000004091136,0.006361721],"genre_scores_gemma":[0.9960075,0.0003675184,0.00008535432,0.00004063446,0.000001593445,0.000005116464,0.000002673448,0.000005150177,0.003484481],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2277999,"threshold_uncertainty_score":0.9975545,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01847024163040138,"score_gpt":0.3013878975655888,"score_spread":0.2829176559351874,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}