{"id":"W7107961399","doi":"10.2139/ssrn.5819372","title":"The structure of a Treponema denticolaoligopeptide-binding protein A, and peptide compositional preference","year":2025,"lang":"","type":"preprint","venue":"SSRN Electronic Journal","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Wilfrid Laurier University","funders":"","keywords":"Treponema denticola; Permease; Periplasmic space; Oligopeptide; Peptide; Transporter; Efflux; ATP-binding cassette transporter; Amino acid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000526581,0.0001706471,0.0001347475,0.0001687235,0.0002262276,0.0002143444,0.0002251762,0.0002590893,0.00136623],"category_scores_gemma":[0.0002071891,0.0001063437,0.0001890848,0.0002104951,0.0001582737,0.0001475409,0.00008905018,0.0003390612,0.0002983246],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002618743,"about_ca_system_score_gemma":0.0002537842,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001593833,"about_ca_topic_score_gemma":0.0008622047,"domain_scores_codex":[0.9999781,0.000002303893,0.000001438679,0.000009199624,0.000004613147,0.000004340613],"domain_scores_gemma":[0.9999094,0.00002284949,0.00002152714,0.000004272502,0.00001349685,0.00002847198],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006488489,0.00003951671,0.001863584,0.0000592311,0.000009787911,0.0003410355,0.00004135925,0.0005429011,0.9939525,0.000371157,0.0001214214,0.002008564],"study_design_scores_gemma":[0.0001561326,0.001937227,0.1566223,0.00003680572,0.0001121077,0.003098298,0.000448948,0.03249644,0.7941922,0.002606673,0.008210517,0.00008238711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998408,0.0002549441,0.0005465497,0.00003987753,0.0000055503,0.000005000878,0.000260084,0.00001193023,0.000468149],"genre_scores_gemma":[0.9970701,0.0001426298,0.001130075,0.00002921915,0.000006528049,0.000004776474,0.0007345516,0.000004757285,0.0008772651],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001593833,"threshold_uncertainty_score":0.004570484,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01626500774182696,"score_gpt":0.2868209636064483,"score_spread":0.2705559558646213,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}