{"id":"W7115568888","doi":"10.17605/osf.io/ms37w","title":"Genetic diversity and molecular epidemiology of Mycobacterium tuberculosis complex clinical isolates in New Brunswick, Canada – A retrospective chart review","year":2025,"lang":"","type":"article","venue":"Open Science Framework","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Molecular epidemiology; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; Genetic diversity; Epidemiology; Molecular diagnostics; Tuberculosis; Diversity (politics)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch","metaepi_narrow","sts","open_science"],"consensus_categories":[],"category_scores_codex":[0.01375143,0.0004788578,0.003445291,0.0003708877,0.0007517653,0.00003643918,0.002957128,0.0005388115,0.0006835553],"category_scores_gemma":[0.06870116,0.0004337596,0.0002377192,0.003638077,0.003709159,0.0003079388,0.01033748,0.00194305,0.00001494806],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009005195,"about_ca_system_score_gemma":0.02031886,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.815977,"about_ca_topic_score_gemma":0.4124717,"domain_scores_codex":[0.9905289,0.00255098,0.002463527,0.002080957,0.0006117825,0.00176382],"domain_scores_gemma":[0.990391,0.00495703,0.0007018069,0.001878242,0.0006493895,0.001422571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002323512,0.0001524335,0.9741343,0.0007519705,0.000176085,0.00005804437,0.0001317925,0.000006304689,0.0001190034,0.007763213,0.01137299,0.005101544],"study_design_scores_gemma":[0.0008624914,0.0005950369,0.9795567,0.008057073,0.0002462633,0.00002091244,0.0001241415,0.00114985,0.0000282678,0.005988962,0.003054664,0.0003156325],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8125721,0.08163197,0.001028044,0.09859905,0.001081049,0.003061923,0.0000355048,0.00001028535,0.001980054],"genre_scores_gemma":[0.855163,0.09767064,0.007569553,0.03922579,0.0001109165,0.00001108126,0.000006229271,0.00001463587,0.0002280935],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4035054,"threshold_uncertainty_score":0.9998114,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06694604139138481,"score_gpt":0.4080574287742754,"score_spread":0.3411113873828906,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}