{"id":"W7115883540","doi":"10.2139/ssrn.5912769","title":"Transcriptomic-based molecular classification of ampullary adenocarcinoma","year":2025,"lang":"","type":"preprint","venue":"SSRN Electronic Journal","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Pancreas Centre (Canada)","funders":"","keywords":"Mesenchymal stem cell; Adenocarcinoma; Transcriptome; Pathological; Gene silencing; Stromal tumor; DNA sequencing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.002101031,0.001003103,0.001099726,0.0004599195,0.0003016252,0.0001125112,0.001692057,0.001653705,0.00003374111],"category_scores_gemma":[0.0001054907,0.001108158,0.001582566,0.0003653864,0.0003760528,0.00001287164,0.0001650419,0.005314921,0.000005667199],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009733063,"about_ca_system_score_gemma":0.01949733,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001445522,"about_ca_topic_score_gemma":0.0004831111,"domain_scores_codex":[0.9922645,0.0006490367,0.001824694,0.001299766,0.0006567719,0.003305218],"domain_scores_gemma":[0.9965454,0.00004323633,0.001143101,0.001265592,0.0007388469,0.0002638081],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001982331,0.0009817877,0.007412488,0.0006796758,0.002198508,0.00001243773,0.0001363885,0.00306943,0.9506855,0.0131485,0.00008076398,0.01961218],"study_design_scores_gemma":[0.01288192,0.006129248,0.006021725,0.001745847,0.003786026,0.0005492438,0.00206686,0.01076523,0.8865149,0.05479401,0.01077466,0.003970322],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.655488,0.05492897,0.2846336,0.0009995644,0.001633745,0.0008211776,0.0001725372,0.00002277401,0.001299579],"genre_scores_gemma":[0.9726858,0.02407349,0.0007192608,0.0003046419,0.0005020521,0.0000325602,0.0005014981,0.0001042622,0.001076419],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3171978,"threshold_uncertainty_score":0.9996424,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01222471568349807,"score_gpt":0.2430632241543042,"score_spread":0.2308385084708061,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}