{"id":"W7116066548","doi":"10.3390/microorganisms14010009","title":"Streptococcus dysgalactiae subsp. equisimilis from Diseased Pigs Are Genetically Distinct from Human Strains and Associated with Multidrug Resistance","year":2025,"lang":"en","type":"article","venue":"Microorganisms","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Université de Montréal; Hospital for Sick Children; Cegep de Saint Hyacinthe","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phylogenetic tree; Multiple drug resistance; Clade; Population; Gene; Phylogenetics; Antibiotic resistance; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00004827902,0.0003493205,0.0004878679,0.00008691073,0.0003226987,0.00009631114,0.0001034674,0.0001634881,0.0008087208],"category_scores_gemma":[0.0001301621,0.0002847498,0.00009230374,0.0002843312,0.0002255824,0.00006240218,0.00007516007,0.0002371923,0.00002406165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002369687,"about_ca_system_score_gemma":0.0001170623,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007262615,"about_ca_topic_score_gemma":0.004443755,"domain_scores_codex":[0.9983497,0.00006888426,0.000344282,0.0006838915,0.000204799,0.0003484714],"domain_scores_gemma":[0.9987633,0.000172338,0.0001529384,0.0005184059,0.0001448561,0.0002481398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001495601,0.0008113529,0.8483739,0.00002342854,0.0007926312,0.0001631512,0.0001076053,6.372507e-7,0.1482693,0.0000372602,0.0008559258,0.000415248],"study_design_scores_gemma":[0.005035549,0.0001501018,0.9641643,0.0004522528,0.0007527672,7.596054e-7,0.0001707479,0.00001778196,0.02823918,0.0004884342,0.000279153,0.0002489796],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949864,0.0004093672,0.0003489264,0.0003979695,0.00009261735,0.0008339434,0.00152579,0.0001871718,0.001217876],"genre_scores_gemma":[0.9953436,0.00001033533,0.0006972659,0.0001969749,0.0000642213,0.00007521181,0.001099918,0.0000474712,0.002465027],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1200301,"threshold_uncertainty_score":0.9999605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01133188572786391,"score_gpt":0.2616308521434151,"score_spread":0.2502989664155512,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}