{"id":"W7116694628","doi":"10.1139/cjm-2025-0198","title":"Highly pathogenic avian influenza (HPAI H5N1, clade 2.3.4.4b, genotype C2.1) in commercial ring-necked pheasants during the 2022 outbreak in the United States","year":2025,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Influenza A virus subtype H5N1; Clade; Outbreak; Highly pathogenic; Genotype; Phylogenetic tree; Virus; Influenza A virus","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008193116,0.000375741,0.0002713406,0.0002766046,0.0006336008,0.0006803851,0.0003725164,0.0007389558,0.0002372893],"category_scores_gemma":[0.001462948,0.0002781131,0.0004003642,0.0002059556,0.0004267968,0.0004161266,0.0004481996,0.0006528735,0.00007978432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001167388,"about_ca_system_score_gemma":0.0003722273,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04075347,"about_ca_topic_score_gemma":0.04775986,"domain_scores_codex":[0.9996454,0.0001019268,0.00002402367,0.00009642656,0.00006531033,0.00006691079],"domain_scores_gemma":[0.9994369,0.000131858,0.0001960459,0.00002415214,0.0000686904,0.000142291],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003180075,0.0002348914,0.9901354,0.00001946077,0.00008957282,0.001374818,0.0005263578,0.002513523,0.0019923,0.00004546842,0.0004039842,0.002346284],"study_design_scores_gemma":[0.00001499766,0.0004452899,0.9872362,0.0000159393,0.00004864263,0.0007430606,0.001147021,0.009732516,0.0003480326,0.00007830703,0.00017351,0.00001662908],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996717,0.00002444682,0.0001118206,0.0000315837,0.000004823685,0.000006161062,0.00004709117,0.000002163873,0.0001002825],"genre_scores_gemma":[0.9995688,0.00003728094,0.0001200593,0.00003068992,0.000007666644,0.000007543963,0.0001749985,8.699986e-7,0.00005219352],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04075347,"threshold_uncertainty_score":0.08103251,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03470159261499402,"score_gpt":0.3179627108895013,"score_spread":0.2832611182745073,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}