{"id":"W7116957544","doi":"10.64898/2025.12.19.695194","title":"The plant circadian clock exerts stronger control over the diel proteome than the transcriptome","year":2025,"lang":"","type":"article","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of Alberta","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada; Leibniz-Gemeinschaft; College of Engineering, Michigan State University; Arizona Biomedical Research Commission; Mitacs; Universität Potsdam; KU Leuven; University of Alberta; Canada Foundation for Innovation; Michigan State University","keywords":"Circadian clock; Circadian rhythm; Transcriptome; Proteome; Arabidopsis; Proteostasis; Bacterial circadian rhythms; Oscillating gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002488097,0.000188075,0.0002323725,0.0002003374,0.0001747992,0.0006303594,0.00009375225,0.0001176522,0.001141377],"category_scores_gemma":[0.0001546107,0.0001225281,0.0001389679,0.0001577407,0.000275444,0.0003636247,0.0004119478,0.0003656899,0.0003031832],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001900123,"about_ca_system_score_gemma":0.0001572397,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002511276,"about_ca_topic_score_gemma":0.000517434,"domain_scores_codex":[0.9998693,0.00001384341,0.000008109045,0.00005748384,0.00003238938,0.00001873294],"domain_scores_gemma":[0.9997658,0.00003284819,0.00007235033,0.00004109546,0.000035697,0.00005210612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003832069,0.000003075229,0.001117483,0.00002225444,0.000004372482,0.00001283069,0.00001266933,0.00002013149,0.9971486,0.0001439592,0.00003059656,0.001445808],"study_design_scores_gemma":[0.00001329519,0.000181722,0.356634,0.00003232396,0.0000366019,0.0003914832,0.0002251211,0.001513723,0.6332734,0.0006935763,0.006986015,0.00001883325],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883974,0.001803185,0.006682947,0.0002430934,0.00004549674,0.000007386036,0.0006110458,0.0001219796,0.002087356],"genre_scores_gemma":[0.995626,0.0005224301,0.001462013,0.0001631294,0.00001833946,0.000006622555,0.0004994327,0.0000415117,0.001660491],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001141377,"threshold_uncertainty_score":0.003818274,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01183027324428833,"score_gpt":0.2076169866932566,"score_spread":0.1957867134489682,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}