{"id":"W7117111892","doi":"10.1134/s0003683825600034","title":"Response Mechanism of Lactobacillus plantarum under Simulated Digestion Based on Proteomics and Metabolomics Analysis","year":2025,"lang":"en","type":"article","venue":"Applied Biochemistry and Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Sinai Health System","funders":"","keywords":"Lactobacillus plantarum; Metabolomics; Proteomics; Probiotic; Digestion (alchemy); Metabolism; Bacteria; Lactobacillus; Mechanism (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002036842,0.0001354225,0.0002409056,0.00003100966,0.00008679549,0.00001304277,0.00008613532,0.0002553574,0.00001376157],"category_scores_gemma":[0.0000165667,0.00006419499,0.0000490656,0.0002779346,0.0001197281,0.000007091074,0.00006101948,0.0001003992,4.657231e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001484243,"about_ca_system_score_gemma":0.00001350331,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001374367,"about_ca_topic_score_gemma":0.000008068817,"domain_scores_codex":[0.9993073,0.00003938889,0.0001743425,0.0003010372,0.0000221686,0.0001557269],"domain_scores_gemma":[0.999622,0.0001679391,0.00008116526,0.00006681037,0.00002481232,0.00003725307],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001100229,0.00006177368,0.0001378428,0.00001120132,0.0001258884,5.767923e-7,0.00000552883,0.00008335604,0.9961945,0.001801089,0.000008704392,0.0004693476],"study_design_scores_gemma":[0.0003781879,0.0001260552,0.002076507,0.00001129034,0.0001611419,0.000002640523,0.00006038665,0.000448858,0.9955955,0.0007528763,0.0002591511,0.0001274323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984958,0.00006289314,0.0001859208,0.0006067852,0.0000196434,0.000163498,0.0002459979,0.00001819331,0.0002013293],"genre_scores_gemma":[0.9989431,0.0000305805,0.0001480919,0.0004471271,0.000007161751,0.000004127809,0.0003557717,6.326528e-7,0.00006339386],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001938664,"threshold_uncertainty_score":0.2617796,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005640356688927597,"score_gpt":0.1949144352292453,"score_spread":0.1892740785403177,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}