{"id":"W7117134020","doi":"10.1159/000550224","title":"Dairy Product Intake Alters the Correlations between Circulating Bile Acids and Short-Chain Fatty Acids with the Bacterial Taxa Roseburia, Faecalibacterium, Flavonifractor, and Verrucomicrobia","year":2025,"lang":"en","type":"article","venue":"Lifestyle Genomics","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Association for the Study of the Liver; Canadian Institutes of Health Research; Université Laval","keywords":"Metabolite; Verrucomicrobia; Food intake; Product (mathematics); Bacteria; Fatty acid","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003725768,0.0002549845,0.0002352423,0.00003661381,0.0005423038,0.0001559748,0.0002405578,0.0001593538,0.000006057473],"category_scores_gemma":[0.00004490734,0.0001725444,0.00004727982,0.0001198638,0.0003070344,0.00001245205,0.0002725611,0.0002828363,0.0000023164],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004199186,"about_ca_system_score_gemma":0.0002273409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006204947,"about_ca_topic_score_gemma":0.0001601837,"domain_scores_codex":[0.9986417,0.0001454652,0.0003039551,0.0004987429,0.00006325895,0.0003469076],"domain_scores_gemma":[0.9991307,0.00007041288,0.0001233359,0.0005357249,0.00005315161,0.00008663024],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008406564,0.00001911285,0.1175682,0.00004228614,0.0001227209,0.000001355847,0.0005257992,0.00003693738,0.8784642,0.00007238391,0.0007913355,0.002271561],"study_design_scores_gemma":[0.001254504,0.0003047385,0.7893498,0.00006274309,0.0002382781,0.0000899605,0.0006295355,0.00009802978,0.05588365,0.00004091562,0.151483,0.0005648651],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955965,0.0004565185,0.0008669433,0.001919508,0.0002939551,0.000609636,0.0001328061,0.0000192133,0.0001049676],"genre_scores_gemma":[0.9974374,0.0001528481,0.0005703067,0.000604479,0.00059956,0.00002555922,0.0003493887,0.00003366352,0.0002268265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8225806,"threshold_uncertainty_score":0.7036154,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009482262645743679,"score_gpt":0.2363109683772359,"score_spread":0.2268287057314922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}