{"id":"W7117458062","doi":"10.1128/mra.01124-25","title":"Complete genome sequence of <i>Escherichia coli</i> EPI300","year":2025,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"","keywords":"Whole genome sequencing; Genome; Sequence (biology); Plasmid; DNA sequencing; Reference genome; Cancer genome sequencing; Sequence assembly; Genome project","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002580655,0.0009101246,0.0006171892,0.001034096,0.0005061829,0.0005959751,0.0007579901,0.0004606015,0.004992558],"category_scores_gemma":[0.0004110961,0.0002723041,0.0004505054,0.001552223,0.0002355756,0.0003597372,0.0003349954,0.001094953,0.006374144],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005049348,"about_ca_system_score_gemma":0.001472214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009108234,"about_ca_topic_score_gemma":0.008000182,"domain_scores_codex":[0.9998583,0.00001513752,0.00001280727,0.00002971376,0.00005592026,0.00002822269],"domain_scores_gemma":[0.999731,0.00003167836,0.00003399208,0.00002926267,0.0001141832,0.00005989407],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006339811,0.00008266744,0.0005387618,0.0004175466,0.00001215933,0.0002410258,0.00006310426,0.000369975,0.9751714,0.0004347866,0.004354686,0.01767986],"study_design_scores_gemma":[0.0002093841,0.0007136831,0.06859338,0.0002701418,0.0002064259,0.001802669,0.0002999206,0.002758714,0.6845223,0.001474949,0.2389441,0.0002042561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.3744563,0.004278744,0.07159016,0.001089775,0.0003012474,0.001028096,0.5226264,0.002959385,0.02166989],"genre_scores_gemma":[0.1520638,0.0031751,0.04195565,0.0003455597,0.00006388878,0.0003559107,0.787895,0.0006699322,0.01347522],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.009108234,"threshold_uncertainty_score":0.01811045,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01270341614463192,"score_gpt":0.2380747811237865,"score_spread":0.2253713649791546,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}