{"id":"W7117477124","doi":"10.1038/s41564-025-02207-0","title":"Persistent virulent phages exist across bacterial isolates","year":2025,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Lethbridge","funders":"","keywords":"Virulence; Lytic cycle; Genome; Bacteriophage; Bacterial genome size; Temperateness; Bacterial virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005840809,0.0002903197,0.0005195561,0.001085962,0.0006152238,0.001719965,0.0004160043,0.000746088,0.00165905],"category_scores_gemma":[0.001744324,0.0003872525,0.0002633744,0.0006920063,0.0006559223,0.001116892,0.001372085,0.001092348,0.000494981],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003552626,"about_ca_system_score_gemma":0.0003442176,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007542073,"about_ca_topic_score_gemma":0.0006689461,"domain_scores_codex":[0.9991646,0.0001200241,0.00006918138,0.000187433,0.0002673219,0.0001915437],"domain_scores_gemma":[0.9980671,0.0006198852,0.0002945311,0.0003202769,0.0003976045,0.0003007034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001670174,0.00006442202,0.009539972,0.00005862851,0.00002047063,0.0001048217,0.0003421966,0.00006985179,0.9856538,0.0008828292,0.00008114155,0.003014894],"study_design_scores_gemma":[0.00006108916,0.001741569,0.2346714,0.00008057051,0.0002170281,0.002469907,0.005478149,0.003224224,0.7395189,0.00472359,0.007735304,0.00007826459],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947747,0.0004466788,0.003061088,0.0001050061,0.00001813283,0.00001384977,0.00007749115,0.00003186232,0.001471039],"genre_scores_gemma":[0.9974418,0.0001507783,0.001258211,0.00006013544,0.00001284926,0.0000116129,0.0001517946,0.00001822855,0.0008945797],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001719965,"threshold_uncertainty_score":0.005550027,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004453515809929034,"score_gpt":0.2649675836501575,"score_spread":0.2605140678402285,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}