{"id":"W7118075936","doi":"10.47743/jpd.2025.32.1.976","title":"PREDICTION OF 3D STRUCTURE OF MITOGEN-ACTIVATED PROTEIN KINASE KINASE 2 USING ALPHAFOLD 2 AND SIMULATION OF ITS INTERACTION WITH MITOGEN-ACTIVATED PROTEIN KINASE 6 IN ARABIDOPSIS THALIANA","year":2025,"lang":"","type":"article","venue":"Journal of Plant Development","topic":"Melanoma and MAPK Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"","keywords":"Mitogen-activated protein kinase kinase; MAP kinase kinase kinase; MAP2K7; Cyclin-dependent kinase 9; Protein kinase A; c-Raf; Docking (animal); Cyclin-dependent kinase 2; ASK1","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003621359,0.0004147556,0.0007575109,0.0006264969,0.00007841916,0.00002155657,0.000178759,0.0004007407,0.00002584374],"category_scores_gemma":[0.0002163715,0.0003616228,0.0001008978,0.00048796,0.00008742273,0.00006760797,0.00009755231,0.0003511529,9.751579e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002170238,"about_ca_system_score_gemma":0.001124769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006489438,"about_ca_topic_score_gemma":0.00005723397,"domain_scores_codex":[0.9968925,0.0002515164,0.001698593,0.0003975955,0.0004599614,0.0002997982],"domain_scores_gemma":[0.9966092,0.000043116,0.002237721,0.0002343247,0.000747757,0.0001279385],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.007005539,0.0003768842,0.002310821,0.001395301,0.0006772359,0.00005467714,0.0007738401,0.008581673,0.9750252,0.000008631117,0.00001496365,0.003775178],"study_design_scores_gemma":[0.003444595,0.001185287,0.003374854,0.004528511,0.0001574427,0.00007000301,0.0003714589,0.002303037,0.9836855,0.00001726402,0.0005891837,0.0002728703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953272,0.001088045,0.001560249,0.00002219874,0.0004341692,0.001183171,0.0003630314,0.000003266237,0.00001862745],"genre_scores_gemma":[0.9968444,0.00008801077,0.002743314,0.000007784844,0.00006076501,0.000009787697,0.0001590252,0.00002535009,0.00006158262],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008660238,"threshold_uncertainty_score":0.9998836,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01961443145398404,"score_gpt":0.2446703889125219,"score_spread":0.2250559574585379,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}