{"id":"W7124752112","doi":"10.1093/jac/dkaf478","title":"<i>Enterococcus faecium</i> harbouring <i>vanA</i> , <i>optrA</i> and <i>cfr(</i> D) on a linear plasmid in Canada: a CANWARD surveillance case","year":2025,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Manitoba Health; University of Manitoba; Public Health Agency of Canada","funders":"Sandoz Canada; Merck Canada; University of Manitoba; Pfizer","keywords":"Plasmid; Linezolid; Gene; Genome; DNA Transposable Elements; Enterobacteriaceae; MCR-1; Epidemiological surveillance","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001445774,0.001029426,0.0003362005,0.001127413,0.003529124,0.001221523,0.001028407,0.001379092,0.001233484],"category_scores_gemma":[0.001028627,0.0005684396,0.0003925545,0.001278877,0.001329664,0.0004363829,0.0007455063,0.001589425,0.0002513996],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.009249725,"about_ca_system_score_gemma":0.009913998,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7889616,"about_ca_topic_score_gemma":0.8501314,"domain_scores_codex":[0.9993637,0.00003085673,0.00005606499,0.0001449626,0.0001826973,0.0002215902],"domain_scores_gemma":[0.9991611,0.00008554463,0.000145409,0.00003133504,0.0002072678,0.0003693659],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"observational","study_design_scores_codex":[0.000302861,0.0003102469,0.4248203,0.0002469787,0.00008076429,0.5375652,0.003833091,0.0004958959,0.01362794,0.0008522741,0.003447879,0.01441658],"study_design_scores_gemma":[0.00004773905,0.0004235337,0.4098413,0.000276817,0.0002060916,0.5646638,0.009435028,0.001715568,0.006736891,0.0003292264,0.006223106,0.0001008761],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912624,0.0006018967,0.0004514387,0.001349562,0.00003645183,0.00009856778,0.0004416086,0.00002844874,0.005729722],"genre_scores_gemma":[0.9973556,0.0006205523,0.0005921899,0.0004050586,0.00004002498,0.000005298478,0.0002022244,0.000009629633,0.0007694062],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2110384,"threshold_uncertainty_score":0.4245625,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006536934552108013,"score_gpt":0.2441382843072319,"score_spread":0.2376013497551239,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}