{"id":"W7125783311","doi":"10.17504/protocols.io.5jyl8xnm7v2w/v1","title":"Multiplex Assay of Variant Effect in Yeast v1","year":2025,"lang":"","type":"article","venue":"","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Yeast; Multiplex; Saccharomyces cerevisiae; Protocol (science); Multiplex polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001058922,0.001519699,0.001076023,0.0008684187,0.0004550666,0.000993176,0.001031983,0.000695468,0.003785843],"category_scores_gemma":[0.001122384,0.0006470963,0.001104825,0.0006444295,0.0004768076,0.0003920733,0.001330295,0.001793453,0.002982863],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007005125,"about_ca_system_score_gemma":0.0004956677,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001823942,"about_ca_topic_score_gemma":0.003218844,"domain_scores_codex":[0.9986313,0.0001668793,0.0000835676,0.0004017259,0.0005544859,0.0001620216],"domain_scores_gemma":[0.999416,0.0001956963,0.00006690896,0.0001433914,0.00009586681,0.00008204037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000106318,0.00004033326,0.0005456983,0.00006401981,0.00004608452,0.00007420211,0.00004628435,0.0008444943,0.9936504,0.0003407994,0.00033033,0.003911044],"study_design_scores_gemma":[0.0000171258,0.0001727446,0.00283902,0.00001118968,0.00004634505,0.0001387115,0.00002809093,0.004565065,0.9877709,0.0002901844,0.004086161,0.00003446191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4696811,0.0007458132,0.4974579,0.0002275106,0.0002338201,0.0006847718,0.01336033,0.01077715,0.006831616],"genre_scores_gemma":[0.6393614,0.0009289376,0.3117966,0.0002712673,0.00003254011,0.001616757,0.02624828,0.001993017,0.0177512],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003785843,"threshold_uncertainty_score":0.01266491,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003659923694952614,"score_gpt":0.2271429606175849,"score_spread":0.2234830369226323,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}