{"id":"W7131241514","doi":"10.17504/protocols.io.kxygxp64zl8j/v1","title":"SS-VIME: Single-Source Virome-Microbiome Extraction Protocol v1","year":2021,"lang":"","type":"article","venue":"","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke; Agriculture and Agri-Food Canada","funders":"","keywords":"DNA extraction; Human virome; Protocol (science); Microbiome; Nucleic acid; RNA; RNA extraction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000272074,0.0004128737,0.000311197,0.0001629236,0.0003371226,0.0003963828,0.0003229595,0.0006211897,0.005394197],"category_scores_gemma":[0.000210094,0.0004219186,0.0003250559,0.0004701512,0.0001644278,0.00002934461,0.0004152397,0.0005839381,0.001001277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001273515,"about_ca_system_score_gemma":0.0004547217,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004667784,"about_ca_topic_score_gemma":0.0001127372,"domain_scores_codex":[0.9970183,0.000281034,0.0005992473,0.00101676,0.0003242548,0.0007603804],"domain_scores_gemma":[0.9981832,0.0000607355,0.0001735684,0.0007585798,0.0005391162,0.0002847994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004594605,0.001135919,0.000159488,0.0001263855,0.0002148548,0.0000945389,0.00002652027,0.00002409547,0.9534556,0.00002417693,0.03006024,0.01421878],"study_design_scores_gemma":[0.000536959,0.0002811479,0.00006032203,0.00004130267,0.00001948877,0.0005250836,0.0001174732,0.0002048937,0.4981033,0.000005021677,0.499832,0.0002730355],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.2355597,0.002351378,0.03710394,0.007244479,0.007084151,0.1487226,0.0007479304,0.0003061956,0.5608796],"genre_scores_gemma":[0.465368,0.0001885816,0.00118161,0.0004989108,0.001364883,0.01809898,0.0008694039,0.000105233,0.5123245],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.4697718,"threshold_uncertainty_score":0.9998233,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02587274777016988,"score_gpt":0.3367295017022611,"score_spread":0.3108567539320912,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}