{"id":"W7131241514","doi":"10.17504/protocols.io.kxygxp64zl8j/v1","title":"SS-VIME: Single-Source Virome-Microbiome Extraction Protocol v1","year":2021,"lang":"","type":"article","venue":"","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke; Agriculture and Agri-Food Canada","funders":"","keywords":"DNA extraction; Human virome; Protocol (science); Microbiome; Nucleic acid; RNA; RNA extraction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003209596,0.002381723,0.002245284,0.002705713,0.001642486,0.001957072,0.002331513,0.001810282,0.05555229],"category_scores_gemma":[0.006004134,0.001597773,0.001390328,0.00173756,0.0006777208,0.001505216,0.002489736,0.0044312,0.08138002],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005566958,"about_ca_system_score_gemma":0.001968417,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004358968,"about_ca_topic_score_gemma":0.001063441,"domain_scores_codex":[0.9960374,0.0009219638,0.0006028462,0.0007948901,0.001222269,0.0004205993],"domain_scores_gemma":[0.9976304,0.0005489353,0.000154201,0.0006059684,0.0008841696,0.0001762942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009050854,0.0002738731,0.00136157,0.002448632,0.00009793332,0.0005679744,0.0004296171,0.0006512262,0.781545,0.004420737,0.1304067,0.07689162],"study_design_scores_gemma":[0.0001374361,0.0005856151,0.00348592,0.0004791673,0.00008417731,0.0009972933,0.0001610875,0.002920791,0.3974488,0.002483993,0.5909943,0.0002214744],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02314617,0.005475035,0.8095913,0.001040454,0.003728752,0.02253818,0.0778259,0.02648908,0.03016512],"genre_scores_gemma":[0.04271347,0.005703414,0.6239859,0.002365234,0.0005838976,0.04049346,0.2044725,0.009782125,0.06989998],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.05555229,"threshold_uncertainty_score":0.1858409,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02587274777016988,"score_gpt":0.3367295017022611,"score_spread":0.3108567539320912,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}