{"id":"W7131818921","doi":"10.5376/ijmms.2024.14.0030","title":"Mapping the Tumor Microenvironment in Colon Cancer with Spatial Transcriptomics","year":2024,"lang":"","type":"article","venue":"International Journal of Molecular Medical Science","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"","keywords":"Tumor microenvironment; Colorectal cancer; Transcriptome; Cancer","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001598866,0.000240443,0.0002411681,0.0002554459,0.00009181768,0.0002618525,0.001842345,0.000134851,0.000232069],"category_scores_gemma":[0.0001933126,0.0001584759,0.0001982846,0.0004024209,0.001379486,0.00003316559,0.0001407711,0.000714895,0.000003569636],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003397122,"about_ca_system_score_gemma":0.00255725,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002099416,"about_ca_topic_score_gemma":0.0002006542,"domain_scores_codex":[0.9959924,0.0001132566,0.0007279221,0.0004463282,0.002300401,0.0004197553],"domain_scores_gemma":[0.9990152,0.00004391675,0.0002058646,0.0001810202,0.0002538672,0.0003001444],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003499765,0.000218605,0.001397827,0.00003346493,0.000196688,0.002015561,0.0006379285,0.0009629226,0.9276792,0.00008332462,0.00009593706,0.0663285],"study_design_scores_gemma":[0.004598864,0.001519045,0.005677513,0.004699839,0.0001767826,0.003787627,0.0007797448,0.02795419,0.8004091,0.0002196123,0.1492767,0.0009009305],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9259031,0.01104612,0.0417646,0.01711795,0.003747073,0.0001782374,0.00001993819,0.000003214477,0.0002197314],"genre_scores_gemma":[0.99415,0.002618097,0.0003534369,0.002113655,0.0006901054,0.000007304031,0.000003338384,0.00002303897,0.00004096022],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1491808,"threshold_uncertainty_score":0.646246,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01157031339473105,"score_gpt":0.2616822411198308,"score_spread":0.2501119277250998,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}