{"id":"W7132883117","doi":"","title":"Genome Graphs","year":2010,"lang":"en","type":"dissertation","venue":"TSpace","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Genome; Hybrid genome assembly; Shotgun sequencing; DNA sequencing; Reference genome; Genomics; Sequence (biology); Sequence assembly","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008158321,0.0002310755,0.0001622382,0.00007506169,0.00005628651,0.00002638938,0.0002554839,0.0005197136,0.0003149896],"category_scores_gemma":[0.00002185693,0.0002417119,0.0001330637,0.00007214902,0.00002206173,7.470218e-7,0.0000336909,0.0002570367,0.0001519268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007314777,"about_ca_system_score_gemma":0.00007434961,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002648216,"about_ca_topic_score_gemma":0.0002843677,"domain_scores_codex":[0.9990814,0.00001688365,0.0001254445,0.0003837211,0.0001516682,0.0002409283],"domain_scores_gemma":[0.9992615,0.000002223316,0.0001060151,0.0004658846,0.00008550687,0.00007888772],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002576789,0.00002185945,0.00004053688,0.00004336408,0.00006899361,0.000002918933,0.0003005368,0.000001085635,0.9975955,0.00002685676,0.0007429257,0.001129635],"study_design_scores_gemma":[0.0005628098,0.0002424208,0.01563177,0.0000215798,0.000117527,0.00001040169,0.001355861,0.000002478284,0.2649727,0.0002640396,0.7159409,0.0008774978],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"other","genre_scores_codex":[0.9464577,0.002040584,0.00002677818,0.00004637842,0.0007897979,0.0002582976,0.00001017932,0.00002388031,0.05034642],"genre_scores_gemma":[0.4415689,0.001555709,0.002400273,0.0001232918,0.001209094,0.0001304534,0.01544722,0.0002225089,0.5373425],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7326228,"threshold_uncertainty_score":0.9856724,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008151719719698882,"score_gpt":0.2892867902876959,"score_spread":0.2811350705679971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}