{"id":"W7133002540","doi":"","title":"Elucidating gene dynamics in Escherichia coli: Theoretical and practical approaches","year":2007,"lang":"","type":"dissertation","venue":"TSpace","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Heritage","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto","keywords":"Escherichia coli; Gene; Genome; Reporter gene; RNA; Escherichia coli Proteins; Gene expression; Dynamics (music)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001252346,0.0007235887,0.0007759615,0.0002109563,0.0001826458,0.0001178921,0.0002170927,0.001598122,0.0001114826],"category_scores_gemma":[0.0004529962,0.0008001215,0.0002398709,0.0005489984,0.0005112072,0.000007575587,0.0002258313,0.0008427883,0.00001021289],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001980292,"about_ca_system_score_gemma":0.0004182787,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006001963,"about_ca_topic_score_gemma":0.001019923,"domain_scores_codex":[0.9961784,0.0004097768,0.0007788541,0.001350006,0.0004241763,0.0008588282],"domain_scores_gemma":[0.9981698,0.0001221305,0.0004834973,0.0007334024,0.0001563531,0.0003348395],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.006527304,0.003148646,0.03436454,0.002444955,0.004956984,0.000713656,0.0102468,0.006669628,0.7697215,0.1154367,0.0007800952,0.04498919],"study_design_scores_gemma":[0.003343475,0.00118315,0.01425806,0.0004053439,0.002405328,0.0002427001,0.06100806,0.5118265,0.3973483,0.001259094,0.002282384,0.004437656],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9771485,0.003313425,0.01163889,0.0004231632,0.0001877078,0.0005078131,0.000007410541,0.00001308696,0.006759969],"genre_scores_gemma":[0.9804744,0.001303587,0.01406074,0.000106242,0.0003913492,0.00003802995,0.001870077,0.0001227535,0.001632799],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5051568,"threshold_uncertainty_score":0.999698,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01590608852177695,"score_gpt":0.3175097168152333,"score_spread":0.3016036282934564,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}