{"id":"W7133002540","doi":"","title":"Elucidating gene dynamics in Escherichia coli: Theoretical and practical approaches","year":2007,"lang":"","type":"dissertation","venue":"TSpace","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Heritage","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto","keywords":"Escherichia coli; Gene; Genome; Reporter gene; RNA; Escherichia coli Proteins; Gene expression; Dynamics (music)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003881521,0.000389231,0.0003698297,0.0005610614,0.0004326542,0.0008359608,0.0007017867,0.0006088748,0.001197607],"category_scores_gemma":[0.0013336,0.0002710244,0.0003829086,0.0004116455,0.00108558,0.0008795421,0.0004823582,0.0006560294,0.0002261929],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009842991,"about_ca_system_score_gemma":0.0007241302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002318314,"about_ca_topic_score_gemma":0.001480091,"domain_scores_codex":[0.9999161,0.00002447452,0.000003580498,0.0000122447,0.0000329183,0.0000107372],"domain_scores_gemma":[0.9996816,0.0002593268,0.00001467836,0.00001621456,0.00001732801,0.00001091731],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00002742275,0.00007883254,0.000961022,0.0001747851,0.00001327436,0.0001256876,0.0001377874,0.5292886,0.004686889,0.4367564,0.0004855961,0.02726369],"study_design_scores_gemma":[0.000007273724,0.00001373604,0.0001728441,0.0000167838,0.000003829498,0.00002497606,0.00006622843,0.8527874,0.001255273,0.1434101,0.002234746,0.000006824474],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1527593,0.004128587,0.8151826,0.002548961,0.00007784506,0.00006185621,0.0001066322,0.0002086722,0.02492561],"genre_scores_gemma":[0.7756117,0.007981236,0.2094396,0.0002145001,0.0000828936,0.0002228224,0.0001206317,0.00007038866,0.00625626],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002318314,"threshold_uncertainty_score":0.00714159,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01590608852177695,"score_gpt":0.3175097168152333,"score_spread":0.3016036282934564,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}